KEGG T01077: 7481501

Populus trichocarpa (black cottonwood): 7481501

Entry

7481501           CDS       T01077

Name

(RefSeq) proliferating cell nuclear antigen

K04802

proliferating cell nuclear antigen

Organism

pop Populus trichocarpa (black cottonwood)

Pathway

pop03030

DNA replication

pop03410

Base excision repair

pop03420

Nucleotide excision repair

pop03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:pop00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    7481501
   03410 Base excision repair
    7481501
   03420 Nucleotide excision repair
    7481501
   03430 Mismatch repair
    7481501
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pop03032]
    7481501
   03400 DNA repair and recombination proteins [BR:pop03400]
    7481501
DNA replication proteins [BR:pop03032]
Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    7481501
DNA repair and recombination proteins [BR:pop03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     7481501
   MMR (mismatch excision repair)
    Other MMR factors
     7481501
  TLS (translesion DNA synthesis) factors
   Other TLS factors
    7481501

SSDB

Motif

Pfam:

PCNA_C PCNA_N Rad1 Rad9 Hus1 Ribosomal_L14

Other DBs

NCBI-GeneID:

7481501

NCBI-ProteinID:

XP_002313402

LinkDB

Position

9:complement(4843722..4845752)

AA seq 264 aa
MLELRLVQGSLLKKVLESIKDLVNDANFDFSSSGFSLQSMDSSHVALVALLLKSEGFEHY
RCDRNTSMGMNLGNMSKMLKCAGNDDIITIKGDDGSDTVTFMFESPTQDKIADFEMKLMD
IDSEHLGIPEAEYHAIVKMPSAEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANI
VLRQKTTVDKPEDATVIEMNEPVSMTFALRYMNSFTKATPLSNTVTISMSPDLPVVVEYK
IAEMGYVRFYLAPKMEEDEPEPGA

NT seq 795 nt +upstreamnt +downstreamnt
atgttggagctgaggctggtacagggatctcttcttaagaaagtcttagagtccatcaag
gatctggtcaacgatgcaaactttgacttctcgtcctctgggttctctctccagtccatg
gattccagccacgttgccctggtggctctactcctcaaatcggagggttttgagcactac
cgctgcgaccgtaacacgtcaatgggcatgaatcttggtaacatgtctaagatgttaaag
tgcgctggtaacgatgacatcatcaccatcaaaggcgacgatgggagtgatactgtcact
ttcatgtttgaaagtcccacacaggacaaaattgctgattttgagatgaagttgatggac
attgatagtgagcaccttggaattccagaggcagaataccatgctattgttaagatgcct
tcagctgagtttgctaggatttgtaaagaccttgctagcattggtgatacagttgtgatc
tctgtgacaaaggagggtgttaagttctccacaagaggtgatattggaactgcaaatatc
gtcctgaggcagaaaaccactgttgacaagccagaagatgcaacagtcattgagatgaat
gagccagtgtcgatgacatttgcactgaggtacatgaactccttcaccaaggcaacccca
ctgtcaaacacagttacaatcagcatgtctccagacctgcctgttgtggttgagtacaag
attgctgaaatgggctatgtcagattctacctggctcccaagatggaagaggatgagcct
gaacccggagcctaa

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