Populus trichocarpa (black cottonwood): 7481510
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Entry
7481510 CDS
T01077
Name
(RefSeq) transcription factor IIIB 60 kDa subunit isoform X1
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7481510
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
7481510
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
DUF7351
DUF5817
Zn_Ribbon_TF
Motif
Other DBs
NCBI-GeneID:
7481510
NCBI-ProteinID:
XP_024464609
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Position
9:4734027..4747313
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AA seq
609 aa
AA seq
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MRSCGSCREKVRAYYDENGIVSCSRCGKVLEFSYLSSEASFVQTRSGESHVAGSFVRSVE
SENASRERLYERARDDMLNIKNGLGMGENLGIVNQAMVYYRIAVERNFTRGRRTDQVQAA
CLYIACRENRKPYLLIDFSIYLQINIYVLGAVFLQLCKVLNLTEHAICQKLHDPSIFIHK
YTASLSGGKNKEISDDALTIIASMNYHWIQTGRTPSALWGAALYISALSHGLNCSKSDIL
RLVHVCGKTLSKRLVEFENTESGSLTIEELNAKVEELKESSLPRRNFGEPSSSKELLCQH
KGTNRPSFGFGLCKDCYAIVIGFDGGTDPPAFQNAESQRMKKSSIRHNVSDSNLFAKELN
SQCESRDEERPTRERESAGAATGHLANDFDKLHGVGDMSSKAFDESDGFSDIDDAEVDSY
LHNEEEKRYKKIIWEEMNREYLQEQAAKEAAAATLKKAWEENFKNCPEDLQAAKKLDAAV
KADLAKSKKEIQQKRASEARNLAPAKSAAEAVHRMLTKKRLGSKINYDVLEKLFEDSEAK
DAKKPRTESRSDSADKVLHTDGKDCRLDYTNENDGLGSLDENEDDAVEETCDFLYYENCS
DDDYGNSLW
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcttgtggctcttgtcgagaaaaggttcgtgcatattatgacgaaaatggcatc
gtgtcatgtagtcgctgtgggaaagttctggagttcagttatctttcatctgaagcctct
tttgtacaaactaggtcgggggagagtcatgtggcaggttcgtttgttaggtctgttgaa
agcgaaaacgcttcacgggagaggttgtatgaaagagcacgtgatgacatgctaaacata
aaaaatggcttaggcatgggtgaaaatcttggcatagttaaccaagctatggtgtattac
agaatagcagttgaacggaatttcactaggggccgtaggacagatcaagtacaggctgct
tgtctttacattgcatgtcgggaaaacagaaaaccatatcttcttattgatttttctatt
tacttgcagataaatatttatgtactaggtgctgtatttttgcagctctgcaaagtttta
aatcttaccgagcatgccatttgtcagaaacttcatgatccttccattttcatacacaaa
tatacagctagtttatcaggaggaaaaaacaaggaaatttctgatgatgcactgaccatt
atagcaagtatgaattaccattggatacagacaggtagaacgcccagtgcattgtggggt
gcagcattatatatatctgcactttcacatggcctcaactgctccaaatctgacatctta
aggttggtgcatgtttgcgggaaaacactgtcaaagagattggttgaatttgagaataca
gagtctgggagcttaacgattgaggaactgaatgcaaaggtggaggaactgaaagaaagt
tcattgccacgaagaaattttggggagccatctagttcaaaagagttgctatgtcaacac
aagggtacaaatagaccttcttttggatttggactttgtaaagattgctatgcaattgtt
ataggatttgatggaggaacagatcctccagctttccaaaatgctgagagtcaaagaatg
aaaaaatcatctattagacataacgtgagtgactcaaatttgtttgcaaaagaattgaac
agccaatgcgagagcagagatgaagaaaggccaacacgcgagcgtgaaagtgctggagct
gctacggggcatttagccaatgattttgataaactgcacggtgtgggtgatatgagttct
aaagcttttgacgagtcagatggcttttctgatattgatgatgctgaggttgatagctac
ctgcataacgaggaggaaaaacgttacaaaaaaatcatttgggaagaaatgaaccgagag
tatcttcaggaacaggcagccaaagaagcagccgcagcgactcttaagaaagcttgggag
gagaatttcaagaattgcccagaggacttgcaagctgcaaagaaacttgatgctgcagta
aaagctgatttagcaaaatctaaaaaggaaattcaacaaaagcgagcttctgaagctagg
aacttagctcctgctaaatctgctgcagaagctgtccatcgaatgctaactaagaagaga
ctcggttcgaaaatcaactatgacgtgttggagaaactctttgaggattctgaggccaag
gacgccaagaaaccgcgaacagaatcacgttctgactctgctgacaaggtgctccataca
gacggcaaagattgtcgattagattatacgaatgaaaatgatggtttggggtcactggat
gaaaacgaagacgatgctgttgaagaaacatgtgattttctttattatgaaaattgttct
gatgatgactatggtaacagtttatggtaa
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