Populus trichocarpa (black cottonwood): 7481533
Help
Entry
7481533 CDS
T01077
Name
(RefSeq) RHOMBOID-like protein 1
KO
K27605
rhomboid-like protein, plant [EC:
3.4.21.105
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7481533
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.21 Serine endopeptidases
3.4.21.105 rhomboid protease
7481533
Peptidases and inhibitors [BR:
pop01002
]
Serine peptidases
Family S54: Rhomboid family
7481533
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhomboid
Motif
Other DBs
NCBI-GeneID:
7481533
NCBI-ProteinID:
XP_002313433
LinkDB
All DBs
Position
9:complement(4269749..4272869)
Genome browser
AA seq
378 aa
AA seq
DB search
MMGRGEAGNDSVEIKVHPRQANTPAGSPPHPSQFQNQSVFKNWVPWLVPLFVVANVAVFI
AVMYVNDCPSNSGSCVAPSLGRFSFQPLKENPLLGPSSSTLEKMGALDVNRVVHKHQSWR
LISCIWLHAGVFHVLANMLSLLFIGIRLEQEFGFLRVGLVYVISGFGGSLLSALFIQTGI
SVGASGALFGLLGGMLSELITNWTIYANKFAALLTLLCIIAVNLAVGLLPHVDNFAHIGG
FLSGFFLGFVFLIRPQFKWINQKTCPPGYIAPPAQSKHQTYQYVLWVISLIVLIIGFTLG
LVALFRGVNVNNNCSWCHYLSCVPSSLWSCKSQQVYCQSMELGSQLKLTCLSNGKSNMYD
LSNNDSSKVQMLCAQLCS
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgatggggagaggggaagcagggaacgacagtgtggagataaaggtgcatccaaggcag
gcaaacaccccggcaggctcaccaccgcacccgagccagttccagaaccaatctgttttc
aagaattgggtgccatggcttgtccctttatttgtggtggctaacgttgctgtctttatt
gccgtcatgtatgtcaatgattgcccctccaattctggctcttgtgttgctccttctttg
ggcagattctcctttcagcctctcaaagaaaatccccttcttggcccctcctcttccact
ttggagaaaatgggagctttagatgtgaacagagtggtgcataaacaccagagttggcgc
ctcatttcttgcatatggttacatgctggagtcttccatgtccttgccaacatgctgagt
cttctcttcattggaattcgtcttgagcaagaatttgggttcttgcgagttgggttggtc
tatgtcatatctggcttcggcgggagtttgttgtcggctttgtttattcagactggtatc
tctgttggtgcctctggtgcactttttggtttgctaggaggcatgctttcagagctgatt
accaattggaccatatatgcaaataagttcgcagcactgttgactctcctttgcatcatt
gcagtaaacctagcagttggactcctcccacatgtggacaactttgctcatattggagga
tttctttccgggttttttctgggttttgtattcttaattcgcccccagtttaagtggatt
aaccaaaaaacatgtcctccaggatacattgcacccccagctcaatctaaacaccagaca
tatcagtatgtactgtgggttatatctctgatagtactcatcattggatttactcttggt
ctggtagcactgtttcgaggagttaatgtgaataataactgttcatggtgtcattatttg
agctgcgtcccttcttcgttatggagctgcaaatcacagcaagtttattgtcagtcgatg
gaacttggaagtcaattgaagttgacgtgcttgagcaacgggaaaagcaacatgtatgat
ttgtctaataatgactcttccaaagttcagatgctgtgcgctcaactttgcagttga
DBGET
integrated database retrieval system
