Populus trichocarpa (black cottonwood): 7481646
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Entry
7481646 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7481646 isoform X3
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
7481646
Enzymes [BR:
pop01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
7481646
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
7481646
Prokaryotic type
7481646
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
7481646
NCBI-ProteinID:
XP_002312761
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All DBs
Position
8:complement(15221533..15232686)
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AA seq
338 aa
AA seq
DB search
MTCYGGVAAAAALPSLPPTTLTTLPSSSSNTSVRVRDVGSGGAEHPNTVLKPTVDGFKWR
LLISYDGTHYKGWQFQQTPPTIQCILEKALTRATKLERKDLHLVGASRTDGGVHAWGQVA
HFVTPFNYDSLDSIHAALNGLLPPDIRVREISAVVPEFHARFSAKGKTYHYKIFNDTVMD
PFQRLYAYHVTHKLNAAVMREAANHFIGTRDFSAFVNSSRNDGVPNPVKTIFRFDIIKMG
ALLQLEVEGSGFMYRQVRNMVALLLQIGKEAISPDIVPKILATRDRKELAKYTLAAPPHG
LCLVAVKYNEEHLQLPLVCPTTSLGRHHSISKCKVPFY
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgacatgttatggtggggttgcagcagcggcagcccttccttctcttccacctacaact
ctgactacgcttccttcttcatccagtaacacctctgtaagagtaagagatgtgggcagt
ggtggcgcagaacatcctaatacggtattgaagccaaccgttgatgggtttaagtggcgc
ttacttatatcttatgatggcactcactataaaggctggcaatttcagcaaacccctcca
actatacagtgcattctagaaaaagctttaactcgagctacaaagcttgaaaggaaggat
cttcatttagttggtgccagtaggacagatggaggagtgcatgcctggggtcaggtggca
cactttgttacacctttcaattatgacagcttggatagcattcatgcagctctcaatggt
cttcttcctcctgacattcgtgttagagaaattagtgctgtagttcctgagttccatgct
cgattttctgccaagggaaagacttatcactacaagatatttaatgatactgtcatggat
ccatttcagcgtctgtatgcataccatgttactcataaactcaatgctgctgtaatgaga
gaagcagcaaatcattttattggaacccgcgatttctctgcttttgtcaattcatcacgc
aatgatggagtgccaaatccagtgaagactatttttcgatttgatatcatcaaaatggga
gctctcctacagctagaagttgaaggctccggtttcatgtatagacaagtgcggaacatg
gttgctttgctgctccaaattggcaaggaagcaatttctcctgatattgtcccaaagatt
ttagctactcgtgatcgcaaggagctcgctaaatataccttggctgccccacctcacgga
ctctgtcttgtagctgttaagtataatgaagagcacctacaacttccgttagtttgccct
acaaccagtcttggtaggcatcacagcataagcaagtgtaaggttccattttattaa
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