Populus trichocarpa (black cottonwood): 7481727
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Entry
7481727 CDS
T01077
Name
(RefSeq) serine/arginine-rich splicing factor SR30
KO
K12890
serine/arginine-rich splicing factor 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7481727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7481727
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
SR proteins
7481727
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_YTH1
RRM_occluded
RRM_7
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
7481727
NCBI-ProteinID:
XP_024439646
LinkDB
All DBs
Position
13:985371..991078
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AA seq
298 aa
AA seq
DB search
MSRASRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEEARDAEDA
IRGRDGYNFDGCRLRVELAHGGRRHSSPVDHYSSYSGSSGSRGPSKRSDYRVLVTGLPSS
ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAY
IRVREYDSRRSYSRSPSLSSYVSRSRSRSRSGGYSDRSWSKSPRAKHSRRSRSVSVSSRS
RAGSSPRSFSRSLSRSRSPLASPPRRKHGHRTPSISPGRVSRSPSVRSDRSLSVDSDR
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgagccgagcaagtcgaacactttacgtcggaaatcttcctggtgatattcgcctgagg
gaagttgaagatttgttttataagtatgggcccattgtcgacattgatttgaaaatcccg
ccaaggcctccaggctatgcttttgttgagtttgaagaagctcgtgatgctgaagatgca
attcgtggccgggatggatataattttgatgggtgtagattacgggttgagcttgcccat
ggtgggcgaagacattcatcaccagtggatcattatagcagttacagtggtagcagtggt
agccgtgggccttccaagcgctctgactatcgtgtgttagtgactggattgccttcttct
gcttcatggcaagacctaaaggatcatatgcgtcgagctggtgatgtctgcttttctcaa
gtctttcgtgatcgtggtggcatgacaggaattgtggactacacaaactatgatgacatg
aaatatgctatcaagaagcttgatgactctgagttccggaatgcattttcaagggcatat
attcgggtgagggagtatgattctagacggagttactctaggagccccagtctcagttca
tatgtgtcaagaagccggagtcgaagtcgcagtggaggctatagtgacaggagctggagc
aagtctcccagggcaaaacattcacggcgttctcgatctgtatctgtttcttctcgctct
cgtgcaggatcatctccacgatctttttcaaggtccctttcaagatcaagatctcctctt
gcttctcctcctcgcagaaaacatggccacagaaccccaagcataagccctggtcgtgta
tcccgttcgccttctgtgaggtctgatcgaagcctttcggtggactcagatcgttga
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