KEGG   Populus trichocarpa (black cottonwood): 7481998
Entry
7481998           CDS       T01077                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03018  RNA degradation
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7481998
  09123 Folding, sorting and degradation
   03018 RNA degradation
    7481998
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7481998
   03041 Spliceosome [BR:pop03041]
    7481998
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     7481998
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     7481998
Spliceosome [BR:pop03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    7481998
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 7481998
NCBI-ProteinID: XP_002313290
UniProt: A9PBG1
LinkDB
Position
9:complement(6511979..6515096)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtccggaaggaaagaaacagtattggatttggctaagtttgtggacaagggtgttcaa
gtcaagctcactggtggtagacaagtgactgggactttgaagggatacgatcaattgcta
aaccttgtcctggatgaagcagtagaatttctaagagatgctgatgatccactaaagacc
actgaccagacaaggcgccttggcctgattgtttgcaggggaactgcagtgatgctggtg
tcaccaactgatggtacggatgagattgccaacccttttgtccagccagatggggcctag

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