Populus trichocarpa (black cottonwood): 7481998
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Entry
7481998 CDS
T01077
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7481998
09123 Folding, sorting and degradation
03018 RNA degradation
7481998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7481998
03041 Spliceosome [BR:
pop03041
]
7481998
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7481998
mRNA degradation factors
5'-3' decay
Lsm complex
7481998
Spliceosome [BR:
pop03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
7481998
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
7481998
NCBI-ProteinID:
XP_002313290
UniProt:
A9PBG1
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Position
9:complement(6511979..6515096)
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AA seq
99 aa
AA seq
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MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaggaaagaaacagtattggatttggctaagtttgtggacaagggtgttcaa
gtcaagctcactggtggtagacaagtgactgggactttgaagggatacgatcaattgcta
aaccttgtcctggatgaagcagtagaatttctaagagatgctgatgatccactaaagacc
actgaccagacaaggcgccttggcctgattgtttgcaggggaactgcagtgatgctggtg
tcaccaactgatggtacggatgagattgccaacccttttgtccagccagatggggcctag
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