Populus trichocarpa (black cottonwood): 7482219 Help Entry 7482219           CDS       T01077                                  Name (RefSeq) phytochrome A   KO K12120   phytochrome A Organism pop  Populus trichocarpa (black cottonwood) Pathway pop04712   Circadian rhythm - plant Brite KEGG Orthology (KO) [BR:pop00001]  09150 Organismal Systems   09159 Environmental adaptation    04712 Circadian rhythm - plant     7482219 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  PHY PAS PAS_2 GAF HATPase_c PAS_9 HisKA PAS_4 Motif Other DBs NCBI-GeneID:  7482219 NCBI-ProteinID:  XP_024439765 LinkDB All DBs Position 13:26131..32366 Genome browser AA seq 1126 aa AA seqDB search MSSSRPSHSSSNSARSRHSARIIAQTTVDAKLHADFEESGSSFDYSSSVRVTDSVGGDQP PRSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVVAYSENAPELLTMVSHAVPSVGEH PVLGIGTDIRTIFTAPSASALQKAMGFGDVSLLNPILVHCKTSGKPFYAIVHRVTGSLII DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRAM AYKFHDDDHGEVVSEVTKPGMEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKV LQDEKLPFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSVNPQK RKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLC DMLMRDAPLGIVTQSPNIMDLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMD STGLSTDSLYDAGYPGALALGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGE KDDGRRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDIETMDVDTKTIH ARLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAI GKHLLTLVEDSSVDIVKRMLFLALQGKEEQNIQFEIKTHGSKSECGPICLVVNACASRDL HENVVGVCFVGQDITGQKMVMDKFTRIEGDYKAIVQNRNPLIPPIFGTDEFGWCSEWNPA MTNLTGWKREEVLDKMLLGEVFGLNMACCRLKNQEAFVNLGVVLNTAMTGQESEKVSFGF FARTGKYVECLLCVSKKLDREGAVTGVFCFLQLASQELQQALHVQRLSEQTALKRLKALA YLKRQIWNPLSGIIFSGKMMEGTELGAEQKELLHTSAQCQCQLSKILDDSDLDSIIEGYL DLEMVEFTLREVLVAATSQVMMKSNEKGIRIINDAAEETMAETLYGDSIRLQQVLADFLQ MSVNFTPSGGLLSVSASLTKDQLGQSVYLVHLELRIRHPGAGIPEALLDQMFGEDTDASV EGISLVISRKLVKLMNGDVRYMREAGKSSFIISVELAGGHKSQKRA NT seq 3381 nt NT seq  +upstreamnt  +downstreamnt atgtcttcttcaaggccaagccactcatccagcaattcagcaagatcaagacacagtgct aggattattgctcagaccactgtggatgccaagctccatgctgattttgaggagtcaggc agctcttttgattactcaagctcagtgcgtgttactgactcagttggtggagatcagcca cccaggtctgacaaagtaactacaacttatcttcaccacatccagaaaggcaagctgatc cagccttttggatgcttgctagccttagatgagaaaactttcaaagtcgttgcatacagt gagaatgcccctgaactgttgactatggtcagtcatgcagtgccaagtgttggggaacat cctgttcttggcattggaactgacatcaggactatcttcactgctcctagtgcatctgcc ttgcaaaaagccatgggattcggggatgtttctcttttgaatcctatattggtccattgc aagacttctgggaagccgttttatgccattgttcaccgggtgactggcagtttgatcatt gactttgaacctgtgaagccttacgaggttcccatgactgctgctggtgctctgcaatca tacaagcttgcagccaaagcgattactcggctgcagtctttgcctagtggaagcatggaa aggctttgtgatacaatggttcaggaggtttttgagctcactggatatgatagggcgatg gcctataaatttcatgatgatgatcatggagaagtggtctctgaggttacaaagccaggc atggagccatatttgggtttgcactatccagccactgatatccctcaggcttcacgcttt ctatttatgaagaataaagttcgaatgattgttgattgtcatgcgaaacatgtcaaggtg cttcaggatgagaagcttccatttgatctgacattgtgtggttcaaccctgagggcccca cacagttgtcatttacaatacatggagaacatgaactccatcgcttctctggttatggca gttgtagtcaatgatggggatgaagatggtgatacccctgattctgtgaacccacagaaa agaaagagactttggggtttagtagtgtgtcataatacaagtccgaggtttgttcctttc cctcttaggtatgcttgtgagtttctagctcaagtatttgctatccatgtcaacaaggaa ttggagttagaaaatcaaattgtcgagaagaacatcctccgcacccagacactcttatgt gatatgctcatgcgtgatgcaccattgggtattgtgacacagagcccgaacattatggat ctggtaaagtgtgatggtgctgtcctgttctataggaataagatatggaggttggggata actccaagtgatctgcagcttcaggatatagctttttggctctccgagtaccatatggat tctacaggtttgagtacagacagcttgtatgatgcagggtacccaggggctctggctctt ggtgatgtagtttgtggaatggcagctgtgagaataacttccaaggacatgcttttttgg tttcgatcccagactgctgcagaaattcgatggggtggtgcaaagcatgaacctggggag aaggatgatggaaggagaatgcaccctaggtcatctttcaaggccttccttgaagttgtc aagacaaggagtttgccttggaaggactatgaaatggatgcaatccattctctgcagctt atcctgaggaacgcattcaaagacattgaaaccatggatgtggataccaaaacaattcat gcaaggctaagcgacctcaaaattgaagggatgcaagaacttgaagcagttactagtgag atggtccgtttaattgaaacagctacagtgccaattttggcagttgatgttgatggtcta gttaacgggtggaatacaaaaatttctgaattgactggtcttcttgttgataaagcaatc gggaagcatttgctaacacttgtggaagattcttcggttgacatagtcaaaagaatgtta ttcttggcattgcagggcaaagaagagcaaaacatacaatttgagatcaagacacatggt tccaagtctgaatgtggccccatctgcttagttgttaatgcctgtgcaagcagggacctt catgaaaatgttgtgggggtgtgctttgtgggtcaagatatcactggccagaagatggtc atggacaagttcacccggattgaaggggattacaaagcaattgtacaaaaccgaaaccct ttgattcccccaatatttgggacggatgagtttggctggtgttctgagtggaatcctgcc atgacaaatttgactggttggaaacgagaagaagttctagataaaatgttattgggagag gtttttgggttaaacatggcatgctgtcgtctcaagaaccaggaggcttttgtaaatctt ggtgttgttcttaatactgccatgactggccaggaatccgagaaggtttcttttggtttc tttgctcggactggaaagtatgtggaatgcctgctgtgtgtgagtaagaaattggacaga gagggtgcagtcactggggtattctgctttctacagcttgcaagccaagagctgcaacaa gcacttcatgtccagcgattatcagagcaaactgctttgaaaagattgaaagcattggct tatttaaaaaggcagatctggaatcctctctctggaattatattttctggaaaaatgatg gagggaaccgagttgggagcagaacaaaaggagcttctgcataccagtgcccagtgccag tgccaactcagcaagattcttgatgactcagatctagatagcatcatcgaaggttacttg gatctggaaatggtggagtttaccctgcgtgaggtactagtggcagctaccagtcaagtc atgatgaagagcaatgaaaagggcattcgaataatcaacgatgcagctgaagagacgatg gctgagaccctgtatggtgatagcatcaggcttcaacaggtgttagctgatttcttgcag atgtcagttaattttacaccatctggaggcctgctttctgtttcagctagcttaaccaaa gaccagttggggcaatctgtttatcttgtgcatctggaactcaggataaggcatcctggt gcagggattcctgaagcactgctagatcaaatgtttggggaggatacagatgcgtctgtg gaggggatcagcttggttataagcaggaagctggtgaagctgatgaacggagatgttcgg tacatgagggaagcagggaagtcgagttttatcatatcagtagaacttgctggtggccat aaatcgcaaaaaagggcatga

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