Populus trichocarpa (black cottonwood): 7482342
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Entry
7482342 CDS
T01077
Name
(RefSeq) nuclear cap-binding protein subunit 1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7482342
09122 Translation
03013 Nucleocytoplasmic transport
7482342
03015 mRNA surveillance pathway
7482342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7482342
03041 Spliceosome [BR:
pop03041
]
7482342
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
7482342
Spliceosome [BR:
pop03041
]
Common components
Common spliceosomal components
Cap binding complex
7482342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G
MIF4G_like_2
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
7482342
NCBI-ProteinID:
XP_002313362
UniProt:
B9HP11
LinkDB
All DBs
Position
9:complement(5455596..5469062)
Genome browser
AA seq
868 aa
AA seq
DB search
MSSWRSLLLRIGDNCPDYGTSSDFKEHIETCFGVIRRELEHSSNDILSFLLQCAEQLPHK
IPLYGTLVGLLNLENEDFVKQMVEATQANFQDALDFGNCDMIRILMRFLTVMMCSKVLQP
SSLVVVFETLLSSAATTLDEEKGNPSWQARGDFYVSCILSCLPWGGSELVEQVPEEIESV
MVGIEAYLSIRRHNSDTGLSFFEDDDESGRAVVEKDFLEDLWGRIQVLSSNGWKVDSVPR
PHLSFEAQLVAGKSHEFGPINTPEQPEPLSEVSGVLYGKQKHDAELKYPQRIRRLNIFPA
SKIEDMQPIDRFIVEEYLLDVLLFLNGCRKECASFMVGLPVPFRYDYLMAETIFSQLLLL
PLPPFKPIYYTLVIMDLCKALPGAFPGVVAGAVRALFEKIADLDTECQTRLILWFSHHLS
NFQFIWPWEEWAFVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPALEELLPPK
GSPNFIYSIEDGREKTEQHALSAELNNKVKARQTAREIISWVEESVVPNHGWDVALKVVV
HTLLEIGSKSFTHLITVLERYGQVFARICPDHDKQVMLIAEVSSYWKNNAQMTAIAIDRM
MGYRLISNLAIVRWVFSPANIEQFHTSDRPWEVLRNAISKTYNRISDLRNEISSLKKSVV
SAEEAATKAKTELDAAESKLSLVDGEPVLGDNPARLKRLKANAEKAKEEEVSVHESLEAK
EALLARALDENEALFLSLYKNFSNVLMERLPDPSRARTLRELKSIQADEMTVDLDESSVM
EVDNESGRPNKSQSNGGKESNIYNVGEKEQWCLSTLGYVKAFARQYASEIWAHIEKLDAD
VFTENVHPLFKKAVYSGLSRPINDVSSG
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgagcagctggagaagtctccttcttcgaatcggcgacaactgccccgactatggcacc
agctccgacttcaaagaacacattgaaacttgcttcggtgttattcggcgagagttggag
cactcttctaacgatattttatctttccttctccagtgtgctgaacagttgcctcacaag
attcctttatatggaactttggttggcctattgaacttggagaatgaggacttcgtgaag
caaatggtggaggcaactcaagctaattttcaggatgccctagattttggaaactgtgac
atgattcgcattttgatgcgctttcttactgttatgatgtgcagtaaagttctccaacct
tcttctctggtagttgtctttgaaacactcttatcatctgctgccacaacattggatgaa
gagaaaggaaatccttcctggcaagcccgtggggacttttatgtaagctgcattttatcc
tgtcttccatggggaggatcagagcttgttgagcaagttcctgaggagattgagagcgtc
atggttggtatagaagcttatttgagcattagaaggcataattctgataccggattgtct
ttttttgaggatgatgatgaatctgggagggctgttgttgagaaggatttcttggaagat
ttatggggtcggattcaagtactatctagcaatggatggaaagtagacagtgtacccaga
cctcatctctcgtttgaagctcagctggttgctgggaagtctcatgagttcgggcccatc
aacactcctgagcaacctgagccactttcagaagtctctggggtactttatggtaaacag
aagcatgatgcagagttaaagtatcctcaaaggatacgcaggcttaatatatttcccgcg
agtaaaattgaggatatgcaacccatagatcgcttcattgtggaagagtacttgctggat
gtacttttgttcctcaatggatgtcgaaaggaatgtgcttcgttcatggttggcctgcct
gtaccatttcgttacgactatctcatggcagagacaattttctctcagttacttttgcta
ccattaccacctttcaagccaatatattacacacttgtgataatggacctttgtaaggct
cttcctggagccttccctggagttgtagctggtgcagttcgtgcactttttgagaaaata
gctgatttagatacggagtgtcagacaaggctcatcctttggttttcacaccatctgtca
aactttcaattcatctggccatgggaagagtgggcttttgttttagacctacctaagtgg
gccccacagcgtgtgtttgttcaagaggtcttggaaagagaagtccgtctgtcatactgg
gacaaagttaagcagagcattgagaatgcacctgctttagaagagttgcttccaccaaag
ggtagtccaaactttatatacagcatcgaagatggtagagaaaaaactgagcagcatgct
ttgtctgcagagctcaacaacaaggtgaaggcaaggcaaactgctcgagaaataatctca
tgggtagaagaaagtgtagttcctaatcatggttgggacgtcgcccttaaagtggttgta
catacccttcttgaaatcggttctaaaagtttcactcatttgatcactgttttggagaga
tatggccaagtatttgcacgaatttgtcctgatcatgataagcaggtcatgctgatagct
gaagttagttcatattggaagaacaatgctcaaatgactgccatagcaattgacagaatg
atgggttatcgactaatttctaatttggcaattgtgagatgggtattttctccagcaaac
attgagcaatttcatacatctgatcgtccatgggaggttcttagaaatgctatcagcaag
acttataaccgtatatctgatctaagaaacgagatatcatctcttaagaagagtgttgta
tcagctgaagaagcagcgacaaaggcaaaaacagagttagatgctgctgagtcaaagctc
tctcttgtggatggtgagcctgttcttggtgataaccctgcgaggttgaagcgcttgaaa
gcaaatgctgaaaaggcaaaagaagaagaggtgtctgtgcatgagtctttggaggccaag
gaggctcttcttgctcgtgcccttgatgaaaatgaggcattgttcctctctttgtacaaa
aacttctcaaatgtgttgatggaacgtctacctgatccatctagagctcgaacattgcgg
gaattaaagtcaattcaagcagatgaaatgaccgttgatctcgatgaatcatcagtaatg
gaagtggataatgagagtgggagacccaacaaaagtcagtcgaatggaggaaaggaaagc
aacatctataatgtgggagagaaagagcaatggtgtttatcaactctcggctatgtcaag
gcctttgcaagacagtatgcttctgagatatgggctcacatcgagaagctagatgcagat
gtattcacagaaaatgtgcatcctcttttcaagaaagcagtttattctggtttgagtcgg
ccaatcaatgatgtgtcatctggctaa
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