Populus trichocarpa (black cottonwood): 7482356
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Entry
7482356 CDS
T01077
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7482356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7482356
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7482356
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
7482356
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
DUF4407
CDI_toxin_EC869_like
Motif
Other DBs
NCBI-GeneID:
7482356
NCBI-ProteinID:
XP_024439425
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All DBs
Position
13:complement(4377033..4389338)
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AA seq
892 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKTIEKEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLTVKKGKTRPPRLTHLEASITRHKL
HIKKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDDFSDVDDLYNSLPLDKVES
LEDLVTIGPPGLVKGAPVHSLKTSLVTSAPQMPATVASTHHEGAVVQDQADDTTSQDSNS
DIVARTPPAKSSMVGSSAAATPTGNHAPISVNVQAQTLHDLSAASPTLPGSTSVRGVLEN
AAPSNPSSPATLGNSMKEEEIAGFPGRRSSPSLADAGLARGIGRGGLSSQPSSSIPLSPV
VIPSNGAHGSVPLASDIAKRNILGNDDRIGSAGMVQPLASPLSNRMILPQAGDGTSAVDT
SSAGEAATMGGRVFSPLVTGMQWRPGSSFQNQNEPGQFRARTEIAPDQREKFLQRLQQVQ
QQGHSNILGMPPLTGGNHKQYSAQQNPLLQQFNSQSSSVSQASLGLGVQASGFNTVTSAA
LQQPNSIHQQSSQQVVMSSGAKDAELGHSTVDEQQLKQNLPEDSTTKSALTSGLGKSLVN
EDELTSPYAMDTSAGASGSLTEPLQVPRDIDLSPGQLLQSSQPSSGLGVIGRRSVSDLGA
IGDNLTGSAVNSGAMHNQLYNLQMLEAAYHKLPQPKDSERARSYIPRHPAATPPSYPQVQ
LPMASNPAFWERLSMHSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQR
HEEPKVTTDEYEQGTYVYFDFHVGNEDKQGWCQRIKTEFTFEYNYLEDELIV
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgggagcaagccgcaagttacaaggcgagatcgatcgtgttctaaagaaagttcaagaa
ggcgtcgacgtttttgacagtatctggaacaaggtttatgatacggacaacgtgaatcaa
aaagaaaagtttgaggcagacttgaagaaggaaatcaagaaactgcagagatacagggac
cagatcaaaacatggattcaatccagtgaaataaaggataagaaggttagcgcatcttac
gagcaggctctggtggatgctcgcaagactatcgagaaagaaatggaaagatttaagatc
tgcgaaaaggaaactaagacaaaagcattttccaaagaagggctgggccagcaacccaaa
actgatccaaaggagaaggctaaatcagagacaagggattggttgaataatgtggttggg
gaactggaatctcagattgatagctttgaagctgagattgaggggcttactgttaagaaa
ggaaagacaaggccacccagactgacacatttagaggcatccattacacggcacaagctt
catataaagaagttagagttgatcctgaggctactagacaacgatgagttgagtcctgag
caggttaatgatgttaaagacttcctggatgactatgtggaacgtaatcaggaagatttt
gatgattttagtgatgttgatgatctttacaactcattaccattagacaaggttgaatct
cttgaagacctggttacaattggtcctcctggtcttgtgaagggtgcccccgttcacagc
ttaaagacttccttggtgacatctgctcctcaaatgcctgccactgttgcttctactcat
catgagggtgctgttgttcaagatcaagccgatgatactacttcacaggatagtaattct
gatattgttgcaagaactcctcctgccaaaagtagcatggttggttcttctgctgcagca
acaccaactgggaaccatgcacctatttctgtgaatgttcaggctcaaacattgcatgat
ttgtcagcagcttcaccaactcttcctggttcaacttctgttcgaggtgtcttggaaaat
gcagctccttctaatccttcttctcccgcaacacttggcaattctatgaaggaggaagaa
attgcaggcttccctggccgtagatcatcaccttctcttgctgatgctggattagcaagg
ggcattggtagaggtggcctctctagccagccctcgtctagtatccccctcagtcctgtt
gttattcctagcaacggggctcatggttcagtacctttagcttctgacattgcaaagaga
aatattttgggaaatgatgatagaattgggagtgctggaatggtgcagcctctggcttcc
ccactaagtaaccgaatgatcttgcctcaggctggtgatggaaccagtgcagttgatact
agtagtgctggtgaagctgctactatgggtggcagagttttctctcctttggtcactggc
atgcaatggagacctgggagttcctttcaaaatcagaatgaaccgggccaatttcgtgca
agaactgaaatagctcctgatcagagagagaaatttttgcagcgtcttcagcaagtccag
cagcaaggtcacagtaacattcttggcatgccgcctcttactggtgggaatcataagcag
tattctgcccaacaaaacccccttttgcagcagtttaattctcaaagttcatctgtctct
caagctagtttaggacttggagtgcaggcatcaggtttcaatactgttacatctgctgct
ttacagcagccaaattccatccatcagcagtctagtcagcaagttgtgatgtcaagtggt
gcaaaagatgctgaacttggccattcaacagttgatgagcagcagctaaagcagaattta
cctgaggattcaaccaccaaatctgctcttacatctgggcttggaaaaagtcttgtgaat
gaggatgaactcacatctccatatgcaatggatacttctgctggggcatctggttccttg
acagagcctttacaagtgccaagagatattgatctctctccagggcaactcctacaatcc
agtcaaccatctagtggcctaggtgttattggccggagaagtgtttcggaccttggtgcc
attggcgataatctcactggatctgctgtaaattctggggcaatgcacaatcagttatac
aatttacagatgcttgaggctgcatatcacaagcttcctcaacctaaagactcagaacga
gctaggagctatattccaaggcacccggcagccacccctcctagctatcctcaagttcag
ttaccaatggcaagtaaccctgcattctgggaacgactaagcatgcatagttatggaact
gataccttgttctttgctttttactatcaacagaatacctatcagcagtatctggctgcg
aaagagctaaagaagcaatcttggagataccacagaaaatacaacacctggtttcaacgg
catgaggagccaaaagttaccactgatgaatatgaacaggggacatatgtgtattttgat
ttccatgttggcaatgaggacaaacaaggatggtgtcaaagaatcaagacagagttcact
tttgagtataactatcttgaagatgaactcattgtctag
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