Populus trichocarpa (black cottonwood): 7482373
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Entry
7482373 CDS
T01077
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7482373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7482373
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
7482373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
7482373
NCBI-ProteinID:
XP_002319182
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Position
13:4658995..4668620
Genome browser
AA seq
911 aa
AA seq
DB search
MTQNDADMDETEEEESPKESQTLQTLTATQLSSSVSNLSASSRAIPSNKDFHFYYNFDEF
KIPIQEIAEKSQSLLESIGSSSSNHIFKDKLQFPTDVDIDEAYDWLVNVNDEIFERFDAS
IDEFRRVREETGRVVGVDSEDGFQLVLGKKNKKSMKKTVSDDSVSRAGGDSGVKVADNKK
WILGNKAKVPFHIPTIRRPQEEHNILVNNSNRAFDHVWLERSEDGLRVIHPLERLSVLDF
MDKSTGDVEPAPPLPIESTSFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGLTC
LMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDVVWLQQDFGIYICNL
FDTGQASRVLKLERNSLEHLLHHFCGVTANKEYQNADWRLRPLPDEMIRYAREDTHYLLH
IYDLMRALLLSKPIDNENADPPLLEVYKRSYDVCMQLYEKELFTENSYLNMYGLPSAGFN
AQQLAIVAGLYEWRDAIARAEDESTGYILPNKTLLEIAKEMPVTISKLRQLLKSKHSYIE
RHLSSVVSIIRHSMQTSAAFEAAVQHLKERHMEIPSQEETEANDGSEAQSIPGGNGMNSG
VAACHETSAQLEKGLLKQGSSIVELGRGGQGSSAKHHGANGEVNTGSSSYISDASPTAKV
AGATVQVLKKPTGAFGALLGGAVAKRKLDTDKKVKEKIKLEKIRSSVNLPFHSFMGINEP
PKVVVEEPIGVSEISHPEESLDVPATGSSLQDIILLDNDSDMEQNTHIAEPDRDDSKTTN
ANGDDKSSGSALETDGEEPVSLADLSMSFQKCFPSGNQNKKTAEVKKSGEPSGGLKLKPF
DYTTALRSGEDPAGRLKVGSAKNQRGVLDSVGTIKSSPGAKMQKDDETGEYRQGRRRQAF
PATGNRSATFR
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaaacgacgcggatatggacgaaacggaagaagaagaatcccccaaagaatct
caaactttacaaaccctaacagctacccaattatctagctcagtttcaaacctctccgcc
tcctctcgcgcgattccatcgaacaaagacttccatttctactacaatttcgacgaattc
aagatcccgattcaagaaatcgcagagaagtcgcaatcgctactcgaatcaatagggtct
tcctcttcaaatcatattttcaaagacaagttacagttccctactgatgtcgacatcgac
gaggcgtatgattggctggtgaatgtaaacgacgagatctttgagcgtttcgatgcttca
attgatgaatttaggagagtccgagaggaaacgggtcgggtcgtgggtgtagatagtgag
gatggttttcaattggtgctagggaagaagaataagaagtcaatgaagaaaacggtgagt
gatgactcagtgagtcgtgctggtggtgactcaggagtgaaagtggcggataacaagaag
tggattttgggaaataaggccaaggttccgtttcatataccgacgataaggaggccgcaa
gaggaacataatatattggttaataattcgaatagggcttttgatcatgtttggttggag
agaagcgaagatgggctgagggttattcatccactggaaaggctatctgttcttgatttc
atggataaaagtactggagatgttgagcctgcaccacctcttccaatagagagtacttca
tttaagcttgtggaagaagtcaaggatttgaaggaattggcagctaaattgcgtggtgta
aatgaatttgcggttgatttggagcacaatcaatatcgatcttttcaaggattgacatgc
ttaatgcaaatttctaccagaactgaggattttattgtagatactttaaaacttcgaata
catgttggcccatatcttagggaagttttcaaggatcctgccaagagaaaggtcatgcat
ggagcagatcgagatgttgtgtggcttcaacaggactttggcatatatatctgcaatctt
tttgataccggacaggcctcaagagtgctgaagttggaaagaaatagtttggagcacctc
ttacatcacttttgtggggttactgccaataaagaataccagaatgcagattggagacta
cgccctcttcctgatgagatgataagatatgccagagaagatacccactatctgctgcat
atatatgatttgatgagagctctgttactctcaaagcctattgacaatgaaaatgctgat
cctcctttgttagaggtctacaaacgcagttatgatgtatgcatgcagctgtatgagaag
gagcttttcactgaaaactcgtatctcaacatgtatgggttgcctagtgctggtttcaat
gctcagcagcttgccattgttgcggggctttatgagtggagagatgccattgcccgtgca
gaagatgagagcacaggttatatattgcctaacaaaactcttcttgaaattgccaaagag
atgcctgttacaattagcaaattacgtcaactgctgaaatcaaagcactcatatattgaa
cggcaccttagttctgttgttagcatcattaggcactccatgcaaacctctgctgcattt
gaagctgctgttcaacatttaaaggagagacacatggaaataccctcacaagaagagaca
gaagctaatgatggatctgaagcgcaaagcattcctggtggcaatggaatgaacagcggt
gtggctgcctgccatgaaacttctgcgcagctggaaaaggggcttctgaagcagggaagc
agtattgttgaacttggcagaggtggacaaggaagctctgccaaacatcatggtgcaaat
ggtgaagtgaatactggatccagtagttatatttcagatgcatctccaacagctaaggtt
gctggagcaactgttcaggttctcaagaagccaactggtgcttttggagcacttcttggg
ggtgcagttgcaaagaggaaacttgatactgataaaaaggtcaaggaaaagatcaagtta
gaaaagataagatcctcagtaaaccttccattccattcatttatgggcatcaatgaacct
ccaaaagtagtagtagaagagcccattggagtttctgaaatttcacatcctgaagaatct
ttggatgtcccagctactggttctagtttgcaagatataatactgttggacaatgattca
gacatggaacaaaacactcatattgcagaaccagatagagacgattccaaaactacaaat
gccaatggggatgacaaatcttcaggatctgctttggaaacagatggagaggaacctgtt
tctctagctgatttgtctatgagtttccaaaagtgcttcccatccggtaatcaaaataaa
aaaactgcagaagttaagaaatctggagaaccaagtggcggtttgaagctgaagccattt
gattatactactgcactaagatctggtgaagatccggcaggtaggttgaaagtagggagt
gccaaaaatcagaggggcgtgcttgactctgtgggtacgataaaaagttcaccaggagct
aaaatgcaaaaggatgacgagacaggagaatatcgccaaggcagaagacgtcaggccttt
ccagcaactgggaatcggagtgcaaccttccgatga
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