Populus trichocarpa (black cottonwood): 7482382
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Entry
7482382 CDS
T01077
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7482382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7482382
03016 Transfer RNA biogenesis [BR:
pop03016
]
7482382
Enzymes [BR:
pop01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
7482382
Messenger RNA biogenesis [BR:
pop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
7482382
Transfer RNA biogenesis [BR:
pop03016
]
Prokaryotic type
tRNA degradation factors
7482382
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
WHD_DUF6293
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
7482382
NCBI-ProteinID:
XP_002319726
LinkDB
All DBs
Position
13:complement(4865545..4882800)
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AA seq
925 aa
AA seq
DB search
MLANPSTSTTLHYRPNSTHNPPFSHTNHSCKLSLSPKCPRFTNFAKSKCSSLSLLLSRRK
RERLVTVVKAFEDTSAVNDGPQSLPQPISVKIPVGDRHIMVETGHLGRQASGSVTVTDGE
TIIYTSVCLDDVPSEPSDFYPLSVNYQERFSAAGRTSGGFFKREGRLKDHEVLICRLIDR
PLRPTMLKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIALALSEVPNTKVIAGVRVGLV
DNKFIVNPTTKEMEESKLDLLLAGTDSAIFMIEGYCNFLPEEKLLEAVQIGQDAVRTICN
EVNALVKKCGKPKMLDAIKLPPPELYKHMEEIAGDELVKVLQIRNKVPRRKALQSLEEKV
LSILTEKGYVSKDQSFGIPETVADLLEVEEEDEEVVVDGEVDEGDVHIKPNGRRSSPSLF
SEVDVKLVFKEVTSKFLRRRIVEGGKRSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGET
QSLAVVTLGDKQMAQRVDNLVDEEEFKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLA
ERALEPILPSENDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMG
MVLDTEEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLPVMRT
ALLQARDGRKHILAEMLKCSPSPSKRLSKYAPLIHIMKVNPEKVNIIIGSGGKKVKSIIE
ETGVEAIDTQDDGIVKITAKDLSSIEKSISIISQLTMVPAVGDIYKNCEIKSVAPYGVFV
EIAPGHEGLCHISELSSNWLPKAEDAFKVGDRVDVKLIEVNGKGQLRLSRKALLPEVTSE
KSSAEQQARDLTEGNTEQSKDKSRDTKFVNPTKVDSVEDAPLSKKKAYKRLTSSARDGPK
NSSTTVSSIASKDENSLVNGEAKIG
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgctagcaaaccctagcaccagtactactctccattacaggccgaattccacacacaac
cctccattttcccacactaatcatagctgcaagctctctctctcccctaaatgccctcgc
ttcaccaattttgcaaaatccaagtgttcttcactttctctgcttctatcaagaagaaaa
cgtgaaaggttggttactgtagtcaaagctttcgaggacacctctgctgtaaatgacggc
cctcagtctttgcctcagcctatttctgtcaaaatccccgtcggtgacagacatataatg
gttgagacgggccatcttgggagacaagctagtggttccgtcacagtcacagatggagaa
actattatctatacatctgtttgtttggatgatgttcctagtgagccttctgatttctat
cctctttctgtaaactatcaagagcgattttctgcagcaggtcgaactagtggaggattt
ttcaaacgagaagggaggttgaaagatcatgaggttcttatttgtagattgatagatagg
cctttgcgcccaactatgctcaagggattttaccatgaaactcagatactatcttgggtt
ttaagctatgatggcttgcattctccagattctttggctgtcacagcagctgggatagca
ttagctctttcggaagtgccaaatacaaaagtgattgcaggagttcgagttggccttgtt
gacaacaaatttattgtgaatccaacaaccaaggagatggaagagtcaaaattagattta
ttgctggctggaacagacagtgcaatattcatgatagagggttattgcaattttcttccg
gaagaaaaattgcttgaagcagtacaaattggacaggatgcagtgaggacaatttgcaat
gaggtgaatgctttggtgaagaagtgtgggaaacctaaaatgcttgatgcaatcaaatta
cctcctcctgagctatataagcatatggaggaaatcgctggtgatgagttagtaaaagtg
ttgcaaattaggaataaagtaccaagaagaaaggcccttcaatcactggaagaaaaagtg
cttagtatacttacagaaaagggatatgtaagcaaggatcaaagttttggaatccctgaa
acagttgcagacttgctagaggttgaagaggaggatgaggaagttgttgtagatggtgaa
gtagatgaaggtgatgtccacataaagccaaatggacgcagatcctctccttcgctgttt
tctgaggtggatgtgaagctggtatttaaagaagttacatccaaattcttgcggagacgt
attgtggagggaggaaaaagaagtgatgggagaaccccagaagggatacgtccaattgat
tccagctgtggattactccctagagcacacggaagtgctcttttcacccgtggagaaaca
cagtcattggcggttgttacacttggtgataaacaaatggcacaaagagtagacaacctt
gtggatgaagaggaattcaagaggttctatctacagtactcatttcctccatcatgtgtt
ggagaagtaggccgcataggagcacctagtagaagagaaatcggtcatggaatgcttgct
gagagagctcttgaacctatattaccttctgaaaatgattttccttatactgtacgagtt
gagagtacaatcacagaaagcaatggctcctcaagcatggcctctgtttgtggaggctgc
ttggcactacaagatgctggtgttcctgtgaaatgtatgattgctggcatagcaatgggt
atggttctcgacactgaggaatttgggggcgatggaacaccactcattctgtctgacata
accggatcagaagatgcttctggagatatggatttcaaggttgctggaaatgaagatgga
gtaactgcatttcagatggacataaaggttggaggaattactttacctgtcatgaggacg
gcattgctacaagcaagggatggccgaaagcatattcttgctgaaatgttgaaatgctca
ccttccccttctaaaaggctttctaagtatgccccattgattcatattatgaaggtcaat
ccagagaaagttaacattatcattggttctggtgggaagaaggtgaagagtatcatagaa
gaaaccggagtagaggctattgacacacaggatgatggaattgtaaaaattactgcaaag
gatttgtcaagtatagagaagtccatatccattattagtcaactaactatggttccagct
gttggtgatatctacaagaactgcgagatcaaatcagtagctccttacggagtttttgtt
gagatagccccggggcatgagggactctgccacattagtgaactgagttctaactggttg
ccgaaggcagaagatgctttcaaagttggagatcgtgttgatgttaaactcattgaggta
aatggaaagggacaacttcgccttagtcgcaaagcattacttcctgaagtgacttcagag
aagtccagtgcagagcagcaggcaagggatttaactgaagggaatactgaacagtcaaag
gataaaagccgtgatacaaaatttgtaaatcccaccaaagttgattcagtagaggatgct
ccactttcaaaaaagaaggcttacaagagattaaccagttctgccagagatggaccaaag
aacagtagtacaactgtcagtagtatcgcaagcaaagatgaaaatagtttagtgaatgga
gaagctaagattggatag
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