KEGG   Populus trichocarpa (black cottonwood): 7482406
Entry
7482406           CDS       T01077                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 8B isoform X2
  KO
K03016  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03020  RNA polymerase
pop03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    7482406
  09124 Replication and repair
   03420 Nucleotide excision repair
    7482406
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pop03021]
    7482406
   03400 DNA repair and recombination proteins [BR:pop03400]
    7482406
Transcription machinery [BR:pop03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     7482406
  RNA polymerase III system
   RNA polymerase III
     7482406
  RNA polymerase I system
   RNA polymerase I
     7482406
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      7482406
SSDB
Motif
Pfam: RNA_pol_Rpb8 RNA_pol_RpbG DTP-pb9_B-dom Cellulase
Other DBs
NCBI-GeneID: 7482406
NCBI-ProteinID: XP_024439095
LinkDB
Position
13:5822909..5907190
AA seq 143 aa
MEDLLDFFVIEKLNPDGKKYDKVSRIVARSEKGDLYMVLDVHTEIYPIEEKSRYLVLLTE
TLNTDGTPVDPRNAQGKQPSKEDKFEYVTHGKLYKIDKEGSGADFKLEIYISFGGLQLLL
RGSPSSLARFQLDKNYFMLMRKM
NT seq 432 nt   +upstreamnt  +downstreamnt
atggaagatttgcttgacttctttgtcatcgagaagctcaaccctgatggcaagaaatat
gacaaagtttctcgcattgtagctcgcagtgagaagggggatttgtacatggtgcttgat
gtacacacggagatttatcctattgaagaaaaatcaaggtatttagtcctattaactgaa
acattgaacactgatggcactccggttgaccctcgtaatgcgcagggtaagcaaccatcc
aaagaagacaagtttgagtatgtgacacacgggaaactttacaaaattgacaaggaaggt
tcaggagctgatttcaagttggagatctacatttcatttggtggacttcaactgttgctg
agggggagtcctagctcgcttgccaggtttcagcttgataaaaactattttatgttgatg
aggaagatgtag

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