Populus trichocarpa (black cottonwood): 7482439
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Entry
7482439 CDS
T01077
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7482439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7482439
03019 Messenger RNA biogenesis [BR:
pop03019
]
7482439
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7482439
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
7482439
U7-dependent histone pre-mRNA processing factors
7482439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
HAMP_2
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
7482439
NCBI-ProteinID:
XP_002323823
UniProt:
B9IJR8
LinkDB
All DBs
Position
17:8414429..8421431
Genome browser
AA seq
699 aa
AA seq
DB search
MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPAY
SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLL
TDYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTLDVNGIKFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIH
STISLGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCMTVYQTYIL
SMNERIRNQFANSNPFKFKHISPLNSIEDFSDVGPSVVMASPGGLQSGLSRQLFDMWCSD
KKNACVLPGYVVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGEANEMGRLKQKLITEFADGNTKIITPKNCQSVEMYFNSEKMAKTIGKL
AERTPDVGETVSGILVKKGFTYQIMAPGDLHVFSQLSTGNITQRITIPFSGAFGVIKHRL
EQIYESVESGTDEESGFPTLQVHELVTVKQESDRHISLHWTADPISDMVSDSIVALVLNI
SREVPKVIVESEDIKSEEENEKKAEKVIYALLVSLFGDVKLGENGKLVLRVDGNVAELDK
QSGDVESENEGLKERVRTAFRRIRSAVRPIPLPLPAPAS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacagggcaatcacagtcactaaaaagaagggatgcaccagtaacaagagaa
ggaggggatcagctaactctaacccctttaggtgctggaaatgaagtgggtcgatcctgt
gtttacatgtcatttaaaggcaagactgtattgtttgattgtggaattcatccggcttat
tcgggtatggctgctttaccttacttcgatgagattgacccttccactattgatgtactt
ctcgttacacactttcacttggatcatgctgcatccttgccttattttcttgagaagacc
acattcagaggtcgagttttcatgactcatgcgacaaaggctatctacaagttgcttttg
actgattatgtaaaagtgagcaaagtttcagtggaagatatgttgtttgatgagaaagac
ataaaccgctcaatggataaaatcgaggttattgacttccatcagactctggatgttaat
ggcattaaattttggtgctacactgctggccatgtccttggtgctgccatgttcatggta
gatatcgctggtgttcgagtgctgtatactggagactattcacgtgaagaagatcggcat
cttcgtgctgctgagatgccacaattctctccagacatatgcataattgaatctacctat
ggtgtccaactccatcaacctcgacaccttcgggagaagcgcttcactgatgttatccac
tccaccatctctctaggtggtcgtgttctaattccagcatttgctcttggccgagctcaa
gaactccttttgatccttgatgagtattgggcaaaccatcccgagcttcataacattccc
atatattatgcttctccccttgcaaaaaagtgtatgactgtttaccagacatacatcctt
tctatgaatgaaaggatccgcaatcagtttgcgaattcaaaccccttcaaattcaagcat
atatcaccattaaatagcattgaagattttagtgatgtagggccatctgtggttatggca
agtcctggaggactgcagagcgggttgtcaaggcagttgtttgatatgtggtgctctgat
aagaaaaatgcttgtgttttacctggatatgttgttgaagggaccctagctaagacaatc
attaatgaaccaaaggaggtacagctcatgaatggactaactgcaccactcaacatgcag
gtccattacatctcattctctgcacatgcagattatgctcagacaagtacatttttgaaa
gagctcatgcctcctaacattattcttgttcatggagaagccaatgaaatgggaaggctc
aaacagaaacttatcacagagtttgctgatggcaataccaagataatcaccccaaagaat
tgccagtctgttgagatgtatttcaactctgaaaaaatggcaaaaaccattggaaagctg
gctgaaaggaccccggatgttggtgaaactgtcagtggtatactggtgaagaagggcttc
acttatcaaatcatggcacctggagatctccatgtcttctcacaactatcaactggaaat
attactcagaggattaccattcctttttctggtgcatttggtgtgataaagcacaggctt
gagcagatttatgagagtgtggagtctggaactgacgaggagtctgggtttccaacattg
caagtgcatgagctggtaacagtgaaacaagagtctgatagacatatttcacttcattgg
actgctgaccccataagtgatatggtgtctgattcaattgtagctttggttttgaacatc
agccgggaggttcctaaggtaattgtcgagtcagaggacataaaatctgaggaagaaaat
gagaaaaaagcagagaaagtgatttatgccctccttgtttcactttttggagatgtgaaa
cttggagagaacgggaagctggtcttacgtgttgatgggaatgtggcagagcttgacaaa
cagagtggggatgttgagagtgagaatgaaggtctcaaggaacgagttaggacagcattt
aggcgaatacgaagtgctgtgaggccaatcccgctcccgctccctgcacctgcatcttag
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