Populus trichocarpa (black cottonwood): 7482440
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Entry
7482440 CDS
T01077
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
7482440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7482440
03019 Messenger RNA biogenesis [BR:
pop03019
]
7482440
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
7482440
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
7482440
U7-dependent histone pre-mRNA processing factors
7482440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
HAMP_2
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
7482440
NCBI-ProteinID:
XP_052304643
LinkDB
All DBs
Position
17:8429830..8435426
Genome browser
AA seq
695 aa
AA seq
DB search
MASTGQSQSLKRRDAPVKREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHLAY
SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLL
TDYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIH
STISLGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPVYYASPLAKKCMTVYQTYIL
SMNERIRNQFADSNPFKFKHISPLNSIEDFTDVGPSVVMATPGGLQSGLSRQLFDMWCSD
KKNACVIPGFLVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK
ELMPPNIILVHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSVEMYFNSEKMAKTTGKL
AERTPDVGETVSGILVKKGFTYQIMAPEDLHVFSQLSTGNITQRITIPFSGAFGVIKHRL
EQIYESVESGTDEESGSPTLQVHELVTVKQESDRHISLHWTADPISDMVSDSIVALVLNI
SREVPKVIVESEDIKSEEENEKKAEKVIYAFLVSLFGDVKLGENGKLVISVDGNVAELDK
QSGDVESENEGLKERVRTAFRRIQSAVRPIPLPAS
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacagggcaatcacagtcactaaaaagaagggatgcaccagtaaaaagagaa
ggaggggatcagctaactctaacccctttaggtgctggaaatgaagtgggtcgatcctgt
gtttacatgtcatttaaaggcaagacagtattgtttgattgtggaattcatctggcttat
tcgggtatggctgctttgccttacttcgatgagattgacccttccactattgatgtactt
ctcgttacacactttcacttggatcatgctgcatccctaccttattttcttgagaagacc
acattcagaggtcgagttttcatgactcatgcaacaaaggctatctacaagttgcttttg
actgattatgtaaaagtgagcaaggtttcagtggaagatatgttgtttgatgagaaagac
ataaaccgctcaatggataaaatcgaggttattgacttccatcagactgtggatgttaat
ggcattaaattttggtgctacactgctggccatgtccttggggctgccatgttcatggta
gatattgccggtgttcgagtgctgtatactggagactattcgcgtgaagaagatcggcat
cttcgtgctgctgagatgccacaattctctccagacatatgcataattgaatctacctat
ggtgtccaactccatcaacctcgacacattcgggagaagcgcttcactgatgttatccac
tccaccatctctctaggtggtcgtgttctaattccagcatttgcccttggccgagctcaa
gaactccttttgatccttgatgagtattggtcaaaccatcccgagcttcataacattccc
gtatattatgcttctccccttgcgaaaaagtgtatgactgtttaccagacatacatcctt
tctatgaatgaaaggatccgcaatcagtttgcggattcaaaccccttcaaattcaagcat
atatctccgttaaatagcattgaagattttactgatgtagggccatctgtggttatggca
actcctggaggactgcagagcggtttgtcaaggcagttgtttgatatgtggtgctctgat
aagaaaaatgcttgtgttatacctggatttcttgttgaagggaccttagctaagacaatc
attaatgaaccaaaggaggtacagctcatgaatggactgactgcaccactcaacatgcag
gtccattacatctcgttctctgcccatgcagattatgctcagacaagtacatttttgaaa
gagctcatgcctcctaacattattcttgttcatggagaagccaatgaaatgggaaggctc
aaacagaaacttatcacagagtttactgacggcaacaccaagataatcaccccaaagaat
tgccagtctgttgagatgtatttcaactctgaaaaaatggcaaaaaccactggaaagctg
gctgaaaggaccccggatgttggtgaaactgtcagtggtatactggtgaagaagggcttc
acttatcaaatcatggcacctgaagatctccatgtcttctcacaactatcaactggaaat
attactcagaggattaccattcctttttctggtgcatttggtgtgataaagcacaggctt
gagcagatttatgagagtgtggagtctggaactgacgaggagtctgggtctccaacattg
caagtgcatgagctggtaacagtgaaacaagaatctgatagacatatttcacttcattgg
actgctgaccccataagtgatatggtgtctgattcaattgtagctttggttttgaacatc
agccgggaggttcctaaggtaattgtcgagtcagaggacataaaatctgaggaagaaaat
gagaaaaaagcagagaaagtgatttatgccttccttgtttcactttttggagatgtgaaa
cttggagagaacgggaaactggtcataagtgttgatgggaatgtagcagagcttgacaaa
cagagtggggatgttgagagtgagaatgaaggtctcaaggaacgagttaggacagcattt
aggcgaattcaaagtgctgtgaggccaatcccgctccctgcatcttag
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