Populus trichocarpa (black cottonwood): 7482452
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Entry
7482452 CDS
T01077
Name
(RefSeq) FACT complex subunit SSRP1 isoform X2
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pop03000
]
7482452
03036 Chromosome and associated proteins [BR:
pop03036
]
7482452
Transcription factors [BR:
pop03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
7482452
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
7482452
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box_2
CDC45
YL1
DNA_pol_phi
Motif
Other DBs
NCBI-GeneID:
7482452
NCBI-ProteinID:
XP_024444050
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All DBs
Position
17:complement(8687528..8692700)
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AA seq
583 aa
AA seq
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MADAHLFNNISLGGRGGTNPGQLKISSGGIQWKKQGGGKAVEVDRTDIVGVTWMKVPRTN
QLSVLIKGGPWYKFTGFRDQDLSTLTNFFQSHGITPEEKQLSVSGRNWGEVDLNGNMLTF
LVGSKQAFEVSLADVSQTQMQGKNDVILEFHVDDTTGANEKDSLMELSFHIPNNNTQYIG
DENHPPAQVFRDLIVQRADVGAGGEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQAND
FKIQYSSVVRLFLLPKFNQPHTFVVVTLDPPIRKGQTLYPHIVLQFDTDFVVQSNLSMSE
DLLYTKYKDKLEPSYKGLIHEVFTTVMRGLSAAKVTRPGKFRSCQDGYAVKSSLKAEDGV
LYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQR
NEYHNLFDFISGKGLKIMNLGDMQTTKGVAAVLQNDDDDAVDPHLARIRNEAGDDESDDE
DEDFVAGKDDGGSPTDDSGDGESDASESGDEKENPTKKDFKREASSSKATTKRKSRDGEE
SQKKRKPKKKKDPNAPKRSKSAYMFFSQMERENVRKSMLTILL
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctcatctctttaataatatctctctcggaggtcgtggaggcaccaaccct
gggcagcttaagatatcttcagggggaatccaatggaagaaacaagggggtggtaaggct
gttgaagttgatagaactgatattgttggagtgacatggatgaaggtcccaaggacaaat
caactcagtgttctaatcaaaggtgggccctggtacaagtttactggatttcgtgatcag
gacctatctaccttgaccaattttttccaaagccatggaataacaccagaagagaagcag
ctttcagtcagtggccgtaactggggagaagtggacttaaatggaaatatgcttacattt
ttggttggatcgaagcaagcttttgaggtatctttggcagatgtttcacaaacacaaatg
caagggaaaaatgatgtcatcttggagttccatgtggatgatactactggagcaaatgag
aaagattcattgatggagctaagttttcacatacctaataacaatacgcaatatattggt
gatgaaaatcatcctcctgctcaggttttccgtgacctaattgtgcaaagggcagatgtc
ggtgctggaggtgaagaagctgttgttacatttgagggtatcgcaatcctcacaccaagg
ggtcggtacagtgttgaactgcatttgtctttcttgcggctccaaggacaggctaatgat
ttcaaaattcagtacagcagcgttgtccgcctctttttgcttccaaagtttaaccagcca
cacacctttgttgttgtgactcttgatccaccaatccgcaaagggcaaactctgtatcca
catatcgtgttgcagttcgacactgactttgtagttcaaagcaacttgtcaatgagtgaa
gatcttttgtacacaaagtacaaggacaagttggaaccatcctataaggggcttattcat
gaagtgttcaccactgtaatgcgtggattgtctgctgccaaagttactagaccaggaaaa
ttccgtagttgtcaagatggttatgctgtgaaatcatcattgaaagctgaagatggagtc
ctgtacccactcgaaaagagcttcttcttcttacccaaacccccaacactcattcttcat
gaggagattgactatgtggaatttgagaggcatgctgctggtggctcaaatatgcattac
tttgatcttcttataagacttaaaacagaacaagagcatctttttcggaacatccagagg
aacgaatatcataatctttttgacttcataagtgggaagggcttgaaaattatgaacctg
ggagatatgcaaaccacaaaaggagtggctgctgttcttcagaatgatgatgatgatgct
gttgatccacatcttgcacgcattaggaatgaagctggtgatgatgagagtgatgacgag
gatgaagattttgttgctgggaaggatgatggaggttctcctacagatgactctggagat
ggagaatctgatgccagtgaaagtggtgatgagaaagagaacccgacaaaaaaggatttt
aaaagggaggcttcatcttctaaggcaactacgaagaggaaaagcagagatggagaggaa
agccaaaagaagagaaaaccgaaaaagaagaaggatcctaatgcaccgaagaggtcgaaa
tcagcttacatgttcttctcgcaaatggaaagggagaatgtgaggaagagtatgctaact
atattattgtga
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