Populus trichocarpa (black cottonwood): 7482477
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Entry
7482477 CDS
T01077
Name
(RefSeq) amino acid transporter AVT1I
KO
K15015
solute carrier family 32 (vesicular inhibitory amino acid transporter)
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
7482477
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pop02000
]
7482477
Transporters [BR:
pop02000
]
Solute carrier family (SLC)
SLC32: Vesicular inhibitory amino acid transporter
7482477
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GFIT
Motif
Pfam:
Aa_trans
Motif
Other DBs
NCBI-GeneID:
7482477
NCBI-ProteinID:
XP_002323861
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Position
17:9633180..9635225
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AA seq
431 aa
AA seq
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MDTMPHDELSLTVPLLVDKEQHRLGCKLRDVESNYSFTSSGSTSTFKTVFHGLNALSGVG
ILSIPYALSSGGWLSLILLCVISTAAFYTGLLIQRCMDLDSNIRTYPDIGERAFGKKGRI
LVSVLMYTELYLVSTGFLILEGDNLQNLFPNMGIEVAGFEIGGRQSSVIIVALIILPTVW
LDDMSILSYISASGVIASAIVLISIFWTGAFDGVGFKEKGTLVNWHGIPTAVSLYAFCYC
AHPVFPTLYTSMKNKHQFSNVMILCFILCSLSYASMAVMGYLMFGPSVQSQITLNLPTEK
LSSKLTIYTTLVSPITKYALMIIPIVNATKSWLPMNGKKRPFSLFIGTALVISNVIVALS
LPFFGDLMSLVGAFLSMTASIILPSLCYMKISGTYQRFGFEMVVLWTVVLLGVAVVILGT
YTSLLEIIRHF
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggacaccatgcctcatgatgaattatcgttgaccgtgcctctccttgttgacaaggag
caacacaggctaggatgcaaactgagagatgtggaatcaaattacagttttacaagttca
ggctccacatctaccttcaagactgttttccacggactcaatgctttgtcaggagttgga
atcctttcaattccctatgcactatcatcaggaggatggttgagcctgatccttctctgt
gtcatctccactgcagccttttacaccggcttgttgatccaaagatgtatggatttggat
tcaaatatcagaacttatcctgatataggcgagcgtgcttttggtaagaagggaagaatt
ttggtttcagttctcatgtacacagaactgtatttagtttcaacaggattcctgattctt
gaaggggataatttacaaaatttatttcctaacatggggattgaagtcgcagggtttgaa
ataggtggcagacaaagttctgttataattgtggcccttatcattttgcctacggtttgg
ttggatgacatgagcattctatcttatatctctgccagtggggttatagcttcagctatc
gttctcatctcaattttttggactggtgcatttgatggggttggatttaaggaaaaggga
acgttagtgaattggcatggaatccctactgcagtaagcttgtatgccttctgttactgt
gcacatccagtcttccccaccctttacacttctatgaaaaacaagcatcagttctctaac
gtcatgattctgtgctttattttatgctccttgagctacgcatcaatggcagttatgggt
tacctaatgtttggaccaagcgttcagtcgcagataaccttaaaccttccaaccgaaaag
ctaagctcaaaactgacaatatacaccacactggtcagtcccataacaaagtacgccctg
atgatcattccaattgtaaatgctaccaaaagttggcttccaatgaacggcaagaaaagg
ccatttagcctcttcatcggtacggctttggtgatcagcaatgtcattgtagccctctct
ctccctttctttggtgatctcatgtcgctggtcggagcatttttaagtatgacagcttct
attatacttccatccttatgttacatgaagatttctggaacttatcagcgatttggattt
gagatggtggtcttatggactgtagtgctacttggtgttgctgtcgtgatattgggtact
tacacctctctcttggagataataaggcacttctaa
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