Populus trichocarpa (black cottonwood): 7482777
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Entry
7482777 CDS
T01077
Name
(RefSeq) chaperonin CPN60-2, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
7482777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7482777
03110 Chaperones and folding catalysts [BR:
pop03110
]
7482777
03029 Mitochondrial biogenesis [BR:
pop03029
]
7482777
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7482777
Enzymes [BR:
pop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
7482777
Messenger RNA biogenesis [BR:
pop03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
7482777
Chaperones and folding catalysts [BR:
pop03110
]
Heat shock proteins
HSP60 / Chaperonin
7482777
Mitochondrial biogenesis [BR:
pop03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
7482777
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
7482777
Exosomal proteins of other body fluids (saliva and urine)
7482777
Exosomal proteins of breast cancer cells
7482777
Exosomal proteins of colorectal cancer cells
7482777
Exosomal proteins of bladder cancer cells
7482777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
CO_dh
Motif
Other DBs
NCBI-GeneID:
7482777
NCBI-ProteinID:
XP_002299295
UniProt:
B9GMI8
LinkDB
All DBs
Position
1:complement(4100493..4105278)
Genome browser
AA seq
574 aa
AA seq
DB search
MHRFTSSLASKARIARSSTNQIGSRLSWSRNYAAKDIRFGVEARAGMLKGVEELADAVKV
TMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDTAGDGT
TCATVLTQAIFTEGCKSVAAGMNAMDLRRGISMAVESVVTNLKSRARMISTSEEIAQVGT
ISANGEREIGELIAKAMEKVGKEGVITIQDGKTLSNELEVVEGMKLDRGYISPYFITDQK
TQKCELDDPLILIHDKKVSSLHAVVKVLELALKRQRPLLIVAEDVESEALATLILNKLRA
GIKVCSIKAPGFGENRKAILQDLAALTGGEVITEELGLNLENVDLDMLGSCKKVTVSKDD
TVILDGAGDKKSIEERCEQIRSAIDSSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEV
SEKKDRVTDALNATKAAVEEGIVPGGGAALLYASKELDKLQTANFDQKIGVQIIQNALKT
PVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA
SVSSLMTTTEAVVTDLPKDVKDAPAMGPGMGMDY
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgcttcacttcgagcctcgcttctaaagctcggattgctaggagcagcaccaat
cagattggaagtaggttgagttggagcagaaactatgctgccaaagacataagattcggt
gtggaggctcgtgctgggatgctcaagggtgttgaagagctagctgatgctgtcaaagtc
accatgggccctaagggtcgcaatgtggttattgaacaaagctatggtgcccctaaagtg
acaaaagatggtgtgactgttgctaaaagcattgaattcaaggataaagtcaagaatgtt
ggtgctagcctggtgaagcaggttgcaaatgccaccaacgacactgcaggcgatgggacc
acttgtgctacagttctcactcaagcaatatttactgaaggatgcaaatcagttgcagct
ggaatgaatgcaatggacctaagacgtggtatcagcatggcagttgaatcagttgttacc
aatttgaagagcagagcaagaatgatcagcacatctgaagaaattgcacaagttggtaca
atatcagcaaacggggagagggaaattggtgaattgatagcaaaggccatggagaaggtt
ggcaaagagggagttataacaattcaagatgggaaaacattatctaatgagttggaagtt
gttgaggggatgaagcttgacaggggttatatatccccttatttcatcacagaccagaaa
acccaaaaatgtgaattagatgaccctctcattctgatccatgacaagaaagtctcaagt
ttgcatgctgtggtgaaagtcctagagttggctttaaagagacaaaggcccttgctgatt
gttgctgaagatgtggaaagcgaggccttggcaactcttattttaaataagcttcgtgct
ggaatcaaggtctgttccattaaggcccctggtttcggagagaacaggaaggccatattg
caagatctggctgcactcacaggaggcgaagttataactgaagagcttggcctcaatctt
gaaaatgtggatttggatatgcttggcagttgcaaaaaggttacagtatcaaaggatgac
acagttattcttgatggtgctggcgataagaagtccattgaagaaagatgtgaacagatc
cgatctgcaatagattcaagcacttctgactatgacaaagagaagttgcaagaaagattg
gcaaagctttctggtggtgttgctgtgctgaagattggaggagccagtgaagctgaagtc
agtgagaagaaagatagagttacagatgccctaaatgccacaaaggctgctgtagaagag
ggtattgtgccaggtggtggtgctgctcttctttatgcatcaaaagagttggataagctt
caaactgcaaactttgaccagaagattggtgttcaaattatacagaatgccctgaagact
cctgtgcatacaattgctagtaatgcgggagttgagggagctgttgttgttggtaagcta
ttggagcaggacaaccctgatctagggtatgatgctgccaaaggtgaatatgttgatatg
gtgaaagctggaattattgacccactgaaagtaattagaactgctttggtcgatgctgcc
agtgtctcgtcattgatgacaacaactgaggctgttgtaactgatcttccgaaggatgta
aaggatgctccagcaatgggtccaggcatgggcatggattattga
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