Populus trichocarpa (black cottonwood): 7482905
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Entry
7482905 CDS
T01077
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 23
KO
K15166
mediator of RNA polymerase II transcription subunit 23
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7482905
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Other mediators
7482905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Med23
Motif
Other DBs
NCBI-GeneID:
7482905
NCBI-ProteinID:
XP_002311524
LinkDB
All DBs
Position
8:8821669..8842456
Genome browser
AA seq
1609 aa
AA seq
DB search
MEQSQRSITAAAASASASSRGHQFHPARAAIIDLFNLYLGRSSRQKPDDSARELPNKTQK
RVLALNRELPPPNEQFLLDFEQLHTQFPDQEQLRAVTESVLITLVVQCSNHAPRADFLLF
ALRSLCSIEYINWDSFLPSLLSSVSTTELSVSQAGQAVPAVSSTGLAQNGMLPSSSTISN
SSIFQSLNPTSPLSSVHGIGSPAPLGMEASPSVAMSPVKSSDISGNGPQSSARVNLLIRD
SAMSSLRQLCCKIILTGLEFNLKPVTHADIFNHMLSWLVNWDQRQHGVDESDGVKSWRPV
KALIEWLHSCLDVIWLLVDEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDM
MAMHMQMLDQHLHCPTFGTHRVLSPTIPTVSVEAVANLRYSPITYPSVLGEPLHGEDLAN
SIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLVASCYRPAHGPTPGAVFTSSMICEAT
IDRIVELLKLTNSEMNCWQEWLVFSDIFYFLVKSGCIDFIDFVDKLVSRLIEGDQHIVRT
NHVTWLFAQIIRIELVMNALNTDARKVETTRKVLSFHREDRSSDPNNPQSILLDYISSCQ
NLRIWSLNTSTRECLNSEQLQKGKQIDEWWRQASKGDRMLDYMNMDDKSIGMFWVVSYTM
AQPASETVVNWLSSAGVSELLTGTNMQSNERLMVMREVSPLPMSLLSGLSMNLCLKLVFQ
MEDSLFAGQVVPSIAMVETYCRLLLIAPHSLFRSHFSHLAQRYQSILSKPGVTLLVLEIV
NYRLLPLYRYQGKSKTLMYDVTKIVSTLKGKRGDHRVFRLAENLCMNLILSQRDFFSVKR
EGKGPTEFTETLNRVTIVTLAIIIKTRGIADADHMLYLQTMLEQILATSQHTWSKKTLSY
FPPLLRDALIGRIDKRGLAIKAWQQAETTVINQCTQLISLSADPTYVMTYINHSFPQHRQ
YLCAGAWILMQGHPENINSGHLARVLREFSPEEVTANIYTMVDVLLHNIHVDLQHGHTLQ
DLLLKTCANLAFFIWTHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQSRVKLFCM
NRVRPEHWILSGQFKRLELAKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLLENDA
VDPADRVLAMYSPLLEYHPLRFTFVRDILAYFYGHLPGKLVVRILNVLDLSKIPFSESFP
QHISSPNPVICPPPEYFATLLLGLVNNVIPPLNTNSKYGSVGDASNNSGRNPHTKTSAAS
QSGPTNASEGQKAFYQIQDPGTHTQLVLETAVIELLSLPVAASQIIPSLVQIVVNIQPTL
IQSSNGAPNCVGQGSVLPTSPSGGSTDSLGGSRSTPSVSGINTSNFVLRSGYTCQQLSCL
LIQACGLLLAQLPPDFHVQLYMEASRIIKECWWLTDSKRSLGELDSAVGYALLDPTWAAQ
DNTSTAIGNIIALLHSFFSNLPQEWLEGTHAIIKHLRPITSVAMLRIAFRIMGPLLPRLA
NSHTLFNKTLSLLLNTMVDVFGRNSQTSTAVEASEIADLVDFLHHVVHYEGQGGPVQANS
KPKAEVLALCGRAAESLRPDLQHLLSHLKPDMNSSIYAATHPKLVQNPP
NT seq
4830 nt
NT seq
+upstream
nt +downstream
nt
atggaacaaagccagagatcaataacagcagcagcagcctcggcctcagcctcctcacgc
ggtcaccaattccacccagctcgagctgccattatcgatctcttcaacctctacttaggc
cgaagcagccgccaaaaacccgatgattcagctcgtgaactgccgaacaagacacaaaag
cgtgttcttgctctcaacagagagcttcctcctccgaatgagcaatttctcttagatttc
gagcaacttcatacccaatttccggatcaagagcaattgcgtgctgttacagaatctgta
cttataactctggttgtgcaatgtagtaatcacgccccgcgggcggattttcttctattt
gccctacggagtttatgtagtatagagtacattaactgggatagtttcttgcctagtctt
ctttcttcagtatctaccaccgaattgtcagtcagccaggcaggtcaagcagtgccagct
gtttcgtccactggtttagcgcagaatgggatgcttccttcttcaagcacaatctccaat
tcgtcaatttttcagtctttgaatcctacatccccactatcttctgttcatggcattggc
tctccagccccattggggatggaagcttcaccttctgtagctatgtctccggttaaatca
tcagatatttctggtaatgggccacaatcttcagcaagggtcaatttattgataagggac
agtgccatgagcagtcttcgccagctatgttgcaagattattttaactggacttgagttt
aatttgaagccagtgactcatgctgatattttcaaccatatgttgagctggctggttaat
tgggatcaaagacaacatggtgtcgatgaatctgatggtgtgaaatcctggagacctgtc
aaggctctgattgaatggctgcatagttgtttggatgtgatctggctgctggtggatgag
gataaatgccgagtgcccttctatgaattattgcgcagcgggttgcagtttatagagaac
attcctgatgacgaggccttatttacacttatcttggagattcataggaggcgagatatg
atggctatgcacatgcaaatgttggatcaacaccttcactgccccacatttggtacccat
cgggttttgtctcctacaattcctactgtttcagttgaagctgtggctaacttgcgctat
tcaccaatcacatacccaagcgtgcttggagaacctttgcatggagaggatcttgcaaat
tctattcagaggggaagtttggactgggaaagagctttgcgttgtataagacatgctctt
cgtactactccatcacctgactggtggaagcgtgtgcttcttgtggcttcttgctatagg
cctgctcatgggcctactcctggtgctgttttcacttctagtatgatttgtgaggccact
attgatagaattgttgaactgttgaagttgacaaattcagaaatgaattgttggcaggag
tggcttgtattctctgatatcttctactttcttgtgaaaagtgggtgcatagattttatc
gattttgtggacaaactggtttcaaggctaatagagggtgatcagcacattgttcgaaca
aatcatgttacttggctgtttgcacaaattattcggattgagcttgtgatgaatgcatta
aatacagatgctagaaaggtagagacaacccgaaaggttttatcatttcacagggaagat
cgaagctctgatcctaataatcctcaaagcatcctgcttgattatattagcagttgccaa
aacttacgtatttggtcattgaacacatcaacaagggaatgtttaaatagtgaacagctt
cagaaaggaaagcaaatagatgagtggtggaggcaagcaagcaaaggggatcggatgttg
gattacatgaatatggatgataaatcaattggaatgttttgggttgtatcctacaccatg
gctcagccagcttctgaaacagtggtgaactggttatcctcagctggagtttctgaatta
ttaactggaacaaacatgcagtctaatgagcggttaatggtgatgagggaagtaagccct
ttgccgatgtcactattatctggactttccatgaacctatgtttgaagttggtgtttcaa
atggaagattctttatttgctgggcaggttgttcctagcattgcaatggttgaaacatat
tgtcgattgctgctcatcgctcctcattcactgtttcggtcacacttcagtcatttggca
cagaggtatcaatcaatattgagcaagcctggggtgactcttttggtgctagaaattgtg
aactatcgcttgcttccactttacaggtatcaagggaaaagcaaaaccttaatgtatgat
gttacgaaaatagtttctactttaaaggggaaacgaggagatcaccgtgtttttaggttg
gctgaaaacttgtgcatgaacctcattttatcacaaagggattttttctcagtgaagaga
gaagggaagggccccactgaatttactgaaactttgaatcgtgtaactatagtcactctt
gccatcatcataaaaacacgtggaattgctgacgctgatcacatgctttatcttcaaact
atgttagaacagatattggcaacaagtcaacatacatggtcaaaaaaaacattaagctac
ttccctcctcttcttcgtgatgccttgattgggaggatagataaaaggggtttggctatt
aaagcttggcaacaggcagaaacaacagtgattaaccaatgtacccagctgatctcacta
tcagctgatcccacttatgtgatgacatatatcaatcatagtttcccccaacaccgacaa
tatctatgtgctggtgcatggatactgatgcagggacaccctgaaaacatcaatagcgga
catctggcacgtgttttgagagaattttcccctgaagaagtgacagcgaatatatacaca
atggtggatgttctacttcataacattcatgtggaccttcagcatgggcataccttacag
gaccttttattgaaaacttgtgcaaaccttgcctttttcatttggactcatgagttgctg
ccgttggatattttgcttctggcacttactgaccgtgatgatgatccccatgctttgcgt
attgtgattagcttgcttgataggcaggaacttcaatcaagagtgaaactattttgtatg
aatcgtgtgcgtcctgagcattggattctctcaggacagttcaagcgtcttgaattggca
aaggcacttggaaatcatctatcatggaaggacaggtatcccacattttttgatgacatt
gcggcacgcttgcttccagtcatcccattaattgtttatagacttcttgagaatgatgct
gtagatccagcagacagagttctggccatgtattctccacttttagaatatcacccctta
agattcacatttgttcgtgatatacttgcctacttctatggtcatcttcctggaaagctt
gttgtgcggatactgaatgtacttgatcttagtaagatcccattttccgagtcattccca
cagcacattagctcaccaaaccctgtcatctgcccgcccccagagtattttgcaactctt
ttgttagggcttgtgaataatgtgatacccccactaaataccaactcaaagtatggatca
gttggagacgcttcaaataattcagggcgcaatccacataccaagacatcagcagcctct
cagtctgggccaacgaatgcttctgagggtcaaaaggcgttctatcaaatccaggatcct
ggaactcatactcaactggttctagaaacagctgtcatagaattgctctcacttccagta
gctgcatcccaaattatcccctctctagttcagattgttgttaatatacaaccgactcta
attcaatccagcaatggagctccaaattgtgttggacaaggatcagttttgccaacgtcg
ccttctgggggaagtactgattcactgggtggaagcagatcaaccccttcagtttcagga
atcaatacttcaaattttgttttacgaagtggttatacttgccaacaactttcttgcttg
ttgatccaagcttgtggtctcttactagctcagctccctcctgattttcatgtgcaactt
tatatggaggcatcgcgcataataaaagagtgttggtggcttactgatagcaaaaggtca
cttggggaactagactctgctgttggctatgcattgttggatccaacatgggctgctcaa
gacaacacctcaacagcaatcggtaacataattgccctgctgcattctttctttagcaac
ctcccacaggaatggctagaaggaacacatgctatcattaaacatctcaggccaataaca
tcagttgcaatgttgaggatagcattccgtataatgggtccattgctcccaagacttgct
aactctcacacgctcttcaataagaccctctcattgcttttaaatacaatggtcgatgtt
tttgggaggaattcacagacatcaactgctgttgaagcatcagaaattgcagatcttgtt
gactttctccatcatgttgtccattatgaagggcagggaggtcctgtccaggctaacagc
aagcctaaagcagaggttcttgccctttgtgggagggcagcagaaagtctacgtccagat
ttgcaacatcttctttcgcacttgaaacctgatatgaattcttctatatatgctgccact
catccaaagttggtccagaatcccccatga
DBGET
integrated database retrieval system
