Populus trichocarpa (black cottonwood): 7483508
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Entry
7483508 CDS
T01077
Name
(RefSeq) coatomer subunit beta'-2 isoform X1
KO
K17302
coatomer subunit beta'
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7483508
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7483508
Membrane trafficking [BR:
pop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
7483508
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
7483508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_HPS5
NBCH_WD40
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_DCAF4
WD40_RFWD3
WD40_like
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
WD_LRWD1
TPR_GEMI5
TPR_8
TPR_CcmH_CycH
TPR_2
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
7483508
NCBI-ProteinID:
XP_024453229
LinkDB
All DBs
Position
3:8244528..8255376
Genome browser
AA seq
911 aa
AA seq
DB search
MPLRLEIKRKLAQRSERVKSVDLHPTEPWILVSLYSGTVCIWNYQSQTMAKSFEVTELPV
RSAKFIARKQWVVAGADDMHIRVYNYNTMDKIKVFEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFT
LDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPE
IPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRVVIGYDEGTIMVKIG
REEPVASMDNSGKIIWAKHNEIQTVNIRSVGADFEVTDGERLPLAVKELGTCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKIKIFSKNFQ
EKKSVRPTFSAERIYGGTLLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAI
ASDASFYILKYNRDIVSSYLDSGKPVDEQGVEDAFELLHETNERVRTGLWVGDCFIYNNS
SWRLNYCVGGEVTTMYHLDHPMYLLGYLASQSRVYLIDKEFNVTGYTLLLSLIEYKTLVM
RGDLERASELLPSIPKEHHNSVAHFLESRGMIEDALEVATDPDYRFELAIQLGRLEVAKE
IAIEVQSESKWKQLGELAMSNGKLEMAEECMKHATDLSGLLLLYSSLGDAEGISKLGSLA
IEQGKINVAFLCLFMLGKVEDCLQLLVERNRIPEAALMARSYLPSKVSEIVALWRKDLNK
VNPKAAESLADPEEYPNMFDDWQIALSVESRAAETRGVYPPAEDYQTHADKPHITLVEAF
RNMQIEEEEPLENGDFDHEAEEENGDEQNGEEGSQEEAVVVDAESTDGAVLVNGNEPEEE
WGTNNEGTPSA
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcagactcgaaatcaagaggaaacttgctcaaagatcggagagagtaaagtca
gtcgatctacatccaacagaaccatggattctagtgagtttgtattcagggactgtgtgt
atttggaactaccagtcacagaccatggcgaagtcttttgaggtcactgagttgccagtt
aggtcagccaagttcatagcacgaaagcagtgggttgttgctggagctgatgacatgcat
attcgtgtgtacaactacaacacaatggataagattaaagtttttgaggctcatacagat
tacattagatgtgtggccgtccatcctacccttccctatgtgttgtcatcatctgatgac
atgcttataaaactttgggactgggagaagggatgggcttgtactcagatatttgaggga
cattcccattatgtgatgcaagttacttttaatcctaaagacaccaacacttttgcaagt
gcatcccttgatcgcaccataaagatttggaatcttggctctcccgacccaaattttact
ctggatgctcaccagaaaggagtaaattgtgttgattactttacaggtggagataaacct
tatttaatcactggttctgatgatcacactgcgaaggtatgggattatcaaacgaaaagc
tgtgtccagaccttagaaggccacacacacaatgtctctgctgtatgttttcatcctgaa
attccaataataattacaggttctgaagatgggactgttcgtatatggcattcaacaact
tacaggcttgagaacaccttgaattatggcttggaacgagtttgggctgttggatacatg
aaaggttcacgccgtgttgtgattgggtatgatgaaggaaccattatggtcaagatcggc
cgagaagaacctgtggctagcatggacaatagtggaaagattatatgggcgaagcacaat
gaaattcaaactgtgaacattaggagtgtgggggcagattttgaggtgactgatggtgaa
agattgcctttggctgttaaggagttgggaacatgtgatctttacccccaaagtttaaaa
cacaatcccaatgggaggtttgttgttgtttgtggagatggtgagtacatcatatataca
gctttagcatggagaaacagatcatttggttctgcacttgaatttgtttggtcttcggat
ggtgaatatgctgttagagaaagtacatcaaagattaagattttcagcaaaaatttccag
gaaaagaagagtgtccggccaaccttttcagctgagcgtatttatggaggaaccctgttg
gccatgtgctcaaatgattttatttgtttctatgactgggctgaatgcaggttgattagg
agaattgatgttactgtgaaaaatctctattgggctgatagtggagatttagtggccatt
gctagtgatgcatcattctacatcctcaaatacaatcgtgacatagtttcatcttattta
gatagtggaaaacctgtggatgaacaaggtgttgaggatgcatttgagcttctccatgaa
accaatgaacgtgtcagaactggcttatgggttggggattgtttcatatacaataactcc
tcctggaggctcaattactgtgttggaggcgaggtgaccaccatgtatcatttggaccac
cccatgtacttgcttgggtaccttgctagtcaaagtcgggtgtatttgatagacaaagaa
ttcaatgtcacggggtacactttacttcttagcttaattgagtacaagactctggtgatg
cggggagatctggagagggccagtgaactcttaccttcaattcctaaagaacatcataat
agtgtggcacatttcttggaatcacgaggtatgatagaggatgctctggaagtagctact
gaccctgattatagatttgagctagctatacagcttggtagattagaggttgcaaaggaa
attgccattgaagtgcagagtgagtcaaaatggaaacagttgggagagttagctatgtcc
aatggaaagttggaaatggctgaggaatgcatgaagcacgcaacagacttgagtggtttg
ctgctgctgtattcttccttaggagatgctgaagggatatcaaagcttggatccctggca
atagaacaggggaagattaatgttgcattcctttgtttattcatgttgggcaaagttgaa
gactgcctccagctgttggtggaacgcaatcggatacctgaggctgctttgatggcacga
tcttatcttcccagcaaggtttcagagattgtggcgctttggaggaaagacctgaacaag
gttaatccaaaagctgctgaatctctggctgatcctgaagaatatccaaatatgtttgat
gattggcaaattgcgttatctgttgaatctagagctgcagaaacaaggggcgtgtatcct
cctgcagaggactaccaaacacatgctgataaacctcacatcacccttgtggaggctttc
agaaacatgcaaatagaagaggaggaacctcttgaaaatggagactttgatcatgaggcc
gaagaagagaatggagatgaacagaatggcgaagaagggagccaagaggaagcagttgtg
gtggatgcagagtccacggatggtgctgtactcgttaatggaaacgagcctgaggaagag
tggggtacgaataatgaaggaaccccgtcagcctaa
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