KEGG   Populus trichocarpa (black cottonwood): 7483599
Entry
7483599           CDS       T01077                                 
Name
(RefSeq) exonuclease 1 isoform X1
  KO
K10746  exonuclease 1 [EC:3.1.-.-]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    7483599
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pop03032]
    7483599
   03400 DNA repair and recombination proteins [BR:pop03400]
    7483599
DNA replication proteins [BR:pop03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    7483599
DNA repair and recombination proteins [BR:pop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Other MMR factors
     7483599
SSDB
Motif
Pfam: XPG_N XPG_I XPG_I_2 MIT TPR_1 5_3_exonuc TPR_8 TPR_2
Other DBs
NCBI-GeneID: 7483599
NCBI-ProteinID: XP_052301108
LinkDB
Position
11:8226453..8233408
AA seq 746 aa
MGIQGLLPLLKSIMVPIHIKELEGCSVAVDTYSWLHKGALSCSTQLCKGLPTSRHIEYCM
HRVNLLRHYGVKPILVFDGGLLPMKIEQENKRARTRKENLVRAIEHESNGNSAAAYECYQ
KAVDISPSIAHELIQVLRQENVSYVVAPYEADAQMTFLSVCKQVDAVITEDSDLIPFGCH
RIIFKMDKYGQGVEFQNSRLQQNKDISFVGFTNEMLLEMCIFSGCDYQQSLPGMGLKRAH
ALITKFKSYDKVIKHLRYSTVSVPPLYEESFKKAILTFRHQRVYDPTMKDIVHLSDLPDN
IGNDLEFLGPLIPQQIATGIARGDLDPFTQMPFQLQGESSSSVPVPNVTPKCKNYKLESG
KKKLDLPVQKNLLTKYFCFSSLEAKRNFRAPQLSPTSPSLVIHTSSSPSNNGSEEAASCN
TSCSSASLVVSKSDRNNLHSNNVESCFPDGVHEFMESPSPGMVDEKGPPESILLQQIGHS
MRGPCQALLKECNNENAPISVEGKTRTENKRVIVRSRFFKHKSMNKNGQDNKQEMIRVKD
DVASDTFEDSILEGSENRTGNREITIRSSFFQHKSVNENDQGNKQEKLLERDDSANNIYK
DFILESPSDNKCSNGIMMKRKTSPDDNVQRNMEVKHMRTDASLPDDGCDPHLKETLAGTK
LEERKFGSDISHISHYSNIAEKSMESFISVISSFRYNSSGSRASGLRAPLKDIRNTCTNR
SNNAVDFSQFAYIPKNQKTTVASLRR
NT seq 2241 nt   +upstreamnt  +downstreamnt
atgggaatacaagggcttttacctctcttgaaatcaataatggtaccaatccatattaag
gaattagagggctgttctgttgcggttgatacctattcttggcttcacaaaggtgccttg
tcttgcagcactcagctttgcaaaggattacccacttccaggcacattgagtattgcatg
cacagagtaaatttgctgcggcattatggtgttaagccaattttagtctttgatggaggt
cttctgccaatgaagattgaacaagagaacaaacgtgcaaggacaaggaaagagaacctt
gtgcgtgctattgagcatgagtcaaatggaaattctgcagctgcttatgagtgctatcag
aaggctgttgatatttccccttcaattgcgcacgaactaatccaggtcttaaggcaggag
aatgtatcatatgttgtggccccttatgaggcagatgcccaaatgaccttcttgtcggta
tgcaaacaagtggatgcagttatcaccgaggactctgatctaataccttttggctgtcac
cgaattattttcaaaatggacaagtatgggcaaggagttgagtttcagaattccaggctt
caacagaacaaggatataagttttgtgggtttcacaaacgaaatgcttcttgagatgtgc
attttcagtggttgtgactatcaacaatcattaccaggaatgggactgaaaagggcacat
gcattaattacaaagttcaaaagctatgacaaggtgatcaaacatttgagatatagcaca
gtgtctgttcctccactttatgaagaatcattcaagaaagcaatattgactttcaggcat
caacgtgtttatgatcctactatgaaagatattgtacatttgtctgacctgcctgacaat
attggcaatgatttggaatttttgggcccattgataccgcaacagatagctacaggtata
gcaagaggggatctggatccgtttactcaaatgccattccagttacagggagaaagtagc
agttctgtgccggtacctaatgtaactcccaaatgcaaaaattataaactggaaagtgga
aagaaaaagctagatttgcctgtccagaagaatctgctgactaagtacttctgcttttca
tctctggaagcaaagagaaacttcagagcacctcagttgtcacctacaagtccaagtcta
gtgattcacacttcttcgagtcccagcaataatggtagtgaggaggctgcttcttgtaat
accagctgctcttcagcatccttagttgtctctaagagtgacagaaacaacctccacagc
aacaatgtggaaagttgttttccagatggagttcatgagtttatggagtctccaagtcct
ggcatggtggatgagaaggggcctcctgaaagtattttgctacaacaaattggtcattca
atgcgtggaccttgtcaagcattactaaaggagtgtaataatgagaacgctccaatttct
gttgaggggaaaacaagaacagagaacaaaagggtcattgttaggagtcgtttcttcaag
cacaagtcaatgaacaagaatggccaagacaataaacaagaaatgatcagagtcaaggat
gatgttgccagtgatacgtttgaagatagcatccttgagggatctgaaaatagaacaggg
aacagagagatcactataaggagctcttttttccagcacaagtcagttaatgagaatgat
caaggcaataaacaagaaaagctcttagaaagggatgattcagccaacaatatttataaa
gatttcattcttgagagcccttctgacaataaatgttcaaatggcatcatgatgaaaaga
aagacatccccagatgacaatgttcaaagaaacatggaagtgaagcacatgcgcacagat
gcatctcttcctgatgatggttgcgatcctcacctcaaggagacattagcagggacgaaa
cttgaggaacggaagtttggatctgacatttcacatataagccattattccaacatagca
gagaaatcaatggaaagttttatttctgtgatatcttcatttagatacaactcatctggt
tctcgtgccagtggactgcgagcccctctgaaagacattcggaacacttgtaccaatagg
tcgaataatgccgttgattttagccaatttgcttacattccaaagaaccagaagaccaca
gtagcatctctaagacgctga

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