Populus trichocarpa (black cottonwood): 7483966
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Entry
7483966 CDS
T01077
Name
(RefSeq) chromatin-remodeling ATPase INO80
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
7483966
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7483966
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
7483966
INO80 complex (yeast)
7483966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
7483966
NCBI-ProteinID:
XP_024443170
LinkDB
All DBs
Position
16:complement(2743801..2754325)
Genome browser
AA seq
1530 aa
AA seq
DB search
MDNRRQAKDSLSYSNLFNLESLVNFRVPQPDDEFDYYGNSSQDESRGSQGGAMSKFVNGN
LSERELSSGKRKRRYNNSEGEEEDGYSGARITEEQYRSMLGEHIQKYKRRYKDSLSSPAP
PPRMGIPVPKSSLGGSKTRKLGSEQRGGLYDMETTSEWVNDIVPSKRGDYHEPEFTPKIY
YEPPYLDIGDGVTYRIPPSYDKLAASLNLPSFSDMRVEEFYLKGTLDLGSLAAMTANDKR
FGLRSRAGMGEPQLQYESLQGRLKALAASNSAEKFSLKISEEALNSSIPEGAAGNIKRSI
LSEGGVMQVYYVKVLEKGDTYEIIERSLPKKPKIIKDPSVIEREEMERIGKVWVNIVRRD
IPKHHRIFTTFHRKQLIDAKRFSENCQREVKLKVSRSLKIMKGAAIRTRKLARDMLLFWK
RVDKEMAEVRKKEEREAAEALKREQELREAKRQQQRLNFLIQQTELFSHFMSNKPNSQPS
EALPIADEKTDDQVMDCSTAEAGPDPEEDPEDAELRKEALKAAQDAVSKQKLLTSAFDSE
CSKLREVADIEGPITDASVAGSSNIDLQTPSTMPVTSTVKTPELFKGSLKEYQLKGLQWL
VNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLIVAPASVLNNWADEISRF
CPDLKTLPYWGGLQERMVLRKNINPKRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYM
VLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQF
NEWFSKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVVSELTRKTEVTVHCKLSS
RQQAFYQAIKNKISLAELFDSNRGHLNEKKIMNLMNIVIQLRKVCNHPELFERNEGITYF
YFGEIPNSFLPSPFGELEDIHYSGGRNPITYKIPKVVHNEIVQSSEVLCSAIGRGFGRES
FQKHFNIFSSENVYRSVFALDNSSDSLLIKSGTFGFSHLMDLSPAEVAFLAISSFMERLL
FFIMRWGRRFLDGILDLLMKDIENDHSNYLEKHKVRAVTRMLLMPSRSETDILRRKMATG
PADTPFEALVNSHQDRLLSNIKLLHSTYTFIPRTRAPPIGGQCSDRNFAYQMMEELHQPM
VKRLLTGFARTSTFNGPRKPEPLHPLIQEIDSELPVSQPALQLTYKIFGSCPPMQSFDPA
KLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIM
DRRDMVRDFQLRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLG
QTKDVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQDDLLAPEDVVSLLLDDAQL
EQKLREIPLQARDRQKKKPTKAIRVDAEGDATFEDLTETVAQGTGNEQSEDAEKLKSPNS
NKRKAASDKQITSKPRNSQKNEPNSSPMDYELDDPFPNSEPQSQRPKRLKRPKKSVNEKL
EPAFTATPSIDSSQIQYPPTNNLASTYSNT
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atggacaacaggagacaagccaaggactcgctttcttactccaatttgttcaatcttgag
tctttggtgaacttcagagttccacaaccagatgatgaatttgattattatgggaatagt
agtcaggatgagagcagaggtagccaaggtggagcaatgtcaaaatttgttaatgggaat
ctatcggagagggaattgagttcagggaagagaaagaggcggtataacaacagtgaggga
gaggaggaagacggatattcgggggcacgcattactgaggaacagtatcgatcaatgtta
ggagaacatatccagaagtacaaaaggaggtataaggattccttgtcaagtcctgcacct
cctcctcggatggggattcccgttccaaagagcagtttgggtggttctaaaactaggaag
ctgggaagtgagcagcgagggggtttatatgatatggaaaccacatctgaatgggtcaat
gacattgtaccatcaaaacgcggagactatcatgagccagagttcacgcccaaaatatac
tatgaacctccttatttggatattggggatggtgtcacttataggatacccccctcttat
gataagctggcggcatcattgaacttaccaagcttctcagatatgcgggtggaggaattt
tacttgaagggcaccttagatttgggttccttggcagcaatgacagccaatgataaaagg
tttggacttagaagccgagcgggaatgggagagccccagttacaatacgagtcacttcag
ggaaggttgaaggcattggcagcttctaactctgctgagaaattcagtctcaagatatcc
gaagaggcattgaattcctcaatcccagagggggcagctggaaatataaaacgctctatt
ttgtcagagggcggtgtaatgcaggtttactatgttaaagttttggagaaaggagacaca
tatgagattattgagcggagtctacctaagaagccaaaaataattaaagacccttctgtt
attgagagggaggaaatggaaaggattggtaaagtttgggtaaacattgtgagaagagat
atacctaagcatcataggattttcactacgtttcatcggaagcaactaattgatgcaaag
aggttctcagaaaactgtcaaagagaggtcaaattgaaggttagcagatcactcaaaata
atgaagggtgctgcaattcgcactaggaagttagctagagacatgctactgttttggaag
cgagtggataaggagatggcagaggtgaggaaaaaggaggaaagagaagctgcagaagct
ttgaagcgtgaacaagagctcagggaagcaaaaagacagcagcaaaggctcaattttctc
atacaacaaacagaactgttcagtcatttcatgtcaaacaaaccaaattcacagccgtca
gaagctttgccaattgcagatgaaaagacagatgatcaagtaatggattgtagcactgct
gaagctggacctgatcctgaagaagatcctgaggatgctgaattgagaaaagaggctctc
aaagctgctcaagatgcagtctccaagcagaaactgttaacaagtgcttttgatagtgag
tgttcaaagctgcgtgaagttgctgatattgagggacctataactgatgcctcagttgca
ggatctagcaacattgatttgcagacaccctccaccatgcctgttacatcaacagttaag
acaccagagttgtttaaaggcagccttaaagaatatcagttgaagggtcttcagtggctg
gttaattgttatgagcagggcttaaatggtatactggctgatgagatgggccttggaaag
accattcaagccatggcattcttggctcatttggctgaggaaaaaaatatctggggtcct
tttctgattgttgctcctgcttctgtcttgaataactgggctgatgaaatcagtcgtttc
tgccctgacttgaaaacccttccatattggggtgggcttcaagagcggatggtacttcgg
aaaaacattaatccaaaacgcctttatcgaagggaggctggttttcacattctcattacc
agctatcaattgctagtgtctgatgagaagtattttcggcgtgtgaaatggcaatatatg
gtactagatgaggcccaggctattaagagtgccaacagtataagatggaagacactgctc
agttttaattgtcgtaatcgcctactgctgactggtacaccaattcagaataacatggca
gaattgtgggccctcctacatttcatcatgcccacattatttgacagccacgaacagttc
aatgagtggttttctaaaggaattgagaatcatgcagaacatggaggtactttaaatgag
caccagctaaacagattgcatgcaattctgaagccttttatgctgcgacgtgtgaagaaa
gatgtggtttctgagttaactaggaaaacagaagttactgtacactgcaagttgagctct
cgacaacaagctttctatcaagctattaagaacaagatatctcttgctgagttgtttgat
agcaatcgtggacatcttaatgagaagaaaattatgaatctcatgaacatagtcattcag
ctgagaaaggtttgtaaccatccagagttgtttgaaaggaatgagggaatcacatatttc
tattttggagagattcctaattctttcctgccctctccttttggggagttggaggacata
cattattcaggaggtcgaaatcctattacgtataagattccaaaagtagtccacaatgag
attgtccaaagttctgaggtactttgctcagcaattgggcgtggttttggcagagagtca
tttcaaaagcattttaatatattctcatcagaaaatgtgtatcgatctgtatttgcactg
gacaatagctcagatagcttgcttattaagagtgggacgtttggtttttctcatttgatg
gatttatccccagcggaggttgcatttttggcaattagttcatttatggagaggctgttg
ttttttattatgagatggggccggcgatttttggatggaatcttggacttgctcatgaaa
gacatagaaaatgaccatagcaattaccttgaaaaacataaagttagagctgttacacgg
atgttattgatgccatcaagatctgagacagatatcctaaggaggaaaatggcaacaggc
cctgctgatactccatttgaagctctagttaattctcatcaggacaggcttctgtccaac
atcaaacttctccactcaacttacacgttcatcccacggaccagagcaccaccgatcggt
ggccaatgctcagatagaaactttgcctaccaaatgatggaagaattacaccaacccatg
gttaagaggttgttaactgggtttgcacgcacatccacatttaatggacctagaaagcca
gagcctcttcatcctttgattcaggagattgattctgaactacctgtttcacaacctgcc
cttcagttgacatacaagatttttggttcttgtccccccatgcagagctttgaccctgca
aagttgctcacggattctggaaagcttcaaacacttgatatattactgaaacgattgcga
gcagaaaaccaccgagttctattgtttgctcaaatgacaaaaatgctgaatattctcgag
gactacatgaattataggaaatatagatatcttagacttgatggatcttccaccattatg
gatcgtcgggacatggtcagagacttccagcttaggaatgatatttttgttttcttgcta
agtaccagagctggtgggttgggtattaatttgacagctgcagacactgttatcttttat
gaaagcgattggaatcctacactagatttacaggcaatggatagagcacatcggctgggc
cagacgaaggatgtcactgtctaccggctcatttgtaaagagacagttgaggaaaagatt
ttacaaagagcaagtcagaaaaatactgtgcagcagcttgttatgacaggtggtcatgtt
caggatgatctcttggctcctgaggatgtggtgtccttgcttctggatgatgcccagctg
gagcagaagttgagagaaattccactgcaggccagggatagacaaaagaaaaaaccaacg
aaggcaataagggtagatgctgaaggggatgcaactttcgaagatttgacagaaactgtt
gctcagggcacgggaaatgaacaatccgaggatgcagagaaattgaaatcacccaatagc
aataagaggaaagctgcttctgacaagcagattacatcaaagccaaggaattcacagaag
aatgaaccaaattcttcaccgatggactatgaactggatgatccttttccaaattctgag
ccacagtcacagagacccaagcggttgaagaggccaaagaagagtgtaaatgagaaactc
gaaccagcatttactgccacaccctcaatcgattcatcacagatccaatatccacctaca
aataatcttgcttcaacatattctaacacttga
DBGET
integrated database retrieval system
