Populus trichocarpa (black cottonwood): 7484028
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Entry
7484028 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT2
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
7484028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7484028
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7484028
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
7484028
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
7484028
NCBI-ProteinID:
XP_002323331
UniProt:
B9IIA7
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All DBs
Position
16:complement(4080596..4085391)
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AA seq
304 aa
AA seq
DB search
MAPGGSAFKEVLELVAECDIATSKSENNIAPTKGTVVLSGKHGVYSNNGVHELLECPVCT
NLMYPPIHQCPNGHTLCSACKLRVHNCCPTCRYDLGNIRCLALEKVAESLELPCKYQSLG
CLDVFPYYSKLKHEQHCRFRPYSCPYAGSECSVTGDIPALAAHLKDDHKVDMHDGCTFNH
RYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSY
SLEVGGNGRKLVWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRKELKLRVTGRV
WKEE
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggctcctgggggcagtgcttttaaagaagttcttgaattagttgcagaatgtgacatt
gcaacgtcaaaatcagaaaataacattgcacctacaaaaggtactgttgttctgagtgga
aagcacggggtttattcaaacaatggtgtccatgaactccttgagtgtcctgtctgtaca
aatttaatgtatcctccaattcaccagtgcccaaatggacacactctatgttcagcctgc
aagcttagagtacataactgttgccctacttgccgctatgatcttggaaatatacggtgc
ttggctttggagaaagttgcagaatcattggagctgccctgcaaataccagagtttagga
tgtcttgatgttttcccatactacagcaagctcaagcatgagcaacactgtcgatttcgt
ccatatagctgcccttatgctgggtctgagtgttctgtcactggtgacatccctgccctt
gctgcccatctcaaggacgatcacaaggttgatatgcatgatgggtgtaccttcaatcat
cgttatgtcaaatcaaatccacatgaagttgaaaatgccacatggatgcttactgtattt
aactgttttggaagacagttctgcttgcattttgaggctttccaactgggcatggcacct
gtctatatggccttcttaaggtttatgggtgatgataatgaagcaaagaaattcagttac
agcttagaagttggtggcaatggccggaaactggtatggcaaggaattcccaggagcatc
cgtgatagtcacaggaaagttcgcgatagccaggatgggcttattattcaaaggaatttg
gctctctacttctctggtggggataggaaagagctgaagttgagggttactggtcgtgta
tggaaagaagaatga
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