Populus trichocarpa (black cottonwood): 7484382
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Entry
7484382 CDS
T01077
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1
KO
K28108
shortage in chiasmata 1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pop03036
]
7484382
Chromosome and associated proteins [BR:
pop03036
]
Eukaryotic type
Meiosis-specific proteins
Others
7484382
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GFIT
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NCBI-GeneID:
7484382
NCBI-ProteinID:
XP_002318221
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Position
12:complement(15304975..15311591)
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AA seq
1337 aa
AA seq
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MRTRFLNTDYFSSSPVDTLSFLNLPVTHLAPPTPPEQELHRLLRFFHPLETLSLPIERPP
IDSALSKFISSVLPHFIDFDFRDFLPDRFHQLVFNLQKEEEIERGFGTDSAQEKDNGNNK
HSERLEVIQLEAPEIDTFMENVCFSDEGMQLLSEVSEIENDLDLLRPEIEMQYPDKVQES
VYSVEDVTLEFDMDEKACALEYDGSVQEQAHFHHNTFPLLEVEEMSLRTFTNPSMEDEFL
LFLEHVESKWGQENILHIDGNELLGSMHFDILEFLSKHCPEKQCLEPELASLDTSLGMDI
ISMVEIPQGREDSADCLSPMNPVIFQEFKFLETDSSQFYEVFFEMQSTDEPQTCDSMFRE
DMNFKNFDELIVSCELTLEDDTFKSLPIPIFSDPDKISSIYAIMKEKLAELKPQPLSASH
GIYLDWHLLEEDNYNGKNSSIYQKMLEELDSHNIDFDRESFDGGKLVIDLVFSDNGLSGA
HMEEHKELLNVISETPNSGLVEGASSESLDRRQETGNRETLIGENARKASLLFNSTSQFN
DLDYFLNPGKATARGKNESTVKIPDTRASFPKGSKSHSVPGMNENINDQKLEELLNLAPI
EDKFNMTSSEAADKAEACSIPLQLPYAPYATKTEKTQGDMIYFPDIVIIVNTQNFDKEMI
VSRRSTYQRILAMEKEGAQVVERDLNLPVDVIISSSICLVWYDCGNIGKKATAADEASSC
LPLCIENIAANVLTLLSFAFSGCILVFEGETRFLSTVMEFSDGLYAAAASLGIDLQLFSS
YSAELTDEIILNSILYATKSSRGRYPKMPESETLAESFLTKFPSINPLTAHAILSSGGML
IEFLEWSHERRILAVQQYHVPVESVALFSALCKYGEREDSRSIMTDCSSSASSCPDSDKL
HLHIDSERKRRKCINSLQKIDIQVDDMWKSESLNQFTDGMLDPGVFKQYDCWTSTDPEML
GELKQPSSSLKDLFGQKQVPDIAPVMDFPTSIKPLYSGNFKDPLIRDDRRQPRLPLNDIF
LGQNRASEINIKKELKLDSGNPCKSNANNLHEYFRGEVIDLTDDPVSLEKDVASIANSTY
FSPWMPDTDIEQDSARKSKAARRLSFGKNSHPNNPTAAEKNSCPDLWTPIESDRQRLPQN
RGDPIIDDKHEKVPVKPRKNLLEEAFTLRAAGKSTRFPFEEEISHCGGSGTPLSKAIHSA
HPQPGSPWTIEFLNRVREKSRLRQQSLPPDTCTPDFWNSGNTSKATERRSLSILDFFKYQ
GGSTPRKVYEQKKQKQPIQLSSSSQKERTSASLIPSWTPKDKRSKQTLSFAMDGGNQTRL
VWSDGSAHRMSKKLRRN
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atgcgaactcgatttctaaacacagactacttttcttcttctccggtcgataccctaagc
ttcctaaatcttccagtcactcacttagctcctcctactcctccggagcaagaactgcat
cgtctccttcgcttcttccatcctcttgaaacgctctctctcccgatcgaaagacctcct
atcgattccgctctctccaaattcatctcctcagtgcttcctcatttcatcgactttgat
tttcgtgatttcttacctgatcgatttcatcagttggtgttcaatttgcagaaggaggag
gagatagagagaggttttggaactgattcagctcaagagaaagataatgggaataataaa
cattcggagaggcttgaagttatacaattggaagcaccagagattgatacattcatggag
aatgtgtgcttctctgacgaagggatgcaactcctctctgaagtttctgagattgagaat
gatttggatctgctcaggcctgagattgaaatgcaatatcctgacaaagttcaagaatca
gtttattctgttgaagatgtcacattagagtttgacatggatgaaaaagcttgtgcgctg
gaatatgatggttctgttcaggagcaagcacactttcatcataacacattccctctttta
gaagttgaagagatgagtcttcgaactttcacaaacccatccatggaagatgagtttctt
ttatttcttgagcatgttgagtccaaatggggtcaagaaaatatcctgcatattgacggg
aacgagctattgggttcgatgcactttgatatcttagaatttctttcaaagcattgtcca
gaaaagcaatgccttgaacctgagctggcttctctagatacatccctgggaatggacatt
ataagcatggtggaaattccacagggtcgtgaagactctgcagattgtctttcaccaatg
aacccagttatttttcaggaattcaaattccttgagacggattcatctcaattttacgaa
gtcttctttgaaatgcaatcaacagatgaaccacaaacatgtgactcgatgttcagagaa
gatatgaattttaagaattttgatgaattgattgttagttgtgaactaacactggaagat
gacacattcaaatctctgcctatacctattttttctgatcctgacaagataagttcgatc
tatgccattatgaaggaaaaactagctgaactcaagccacaacccctatctgcatcccat
gggatttatttggattggcatctcttggaggaggataattacaacggtaaaaattcatcc
atatatcaaaaaatgttggaggagttggattcacacaacattgattttgatagggaatcc
tttgatggtggaaagttggtgattgaccttgttttctctgataatggtttgagtggggca
catatggaagaacataaggaactgttgaatgtgatttctgaaactcccaacagtggactt
gtggaaggtgcttcaagtgagtctttggatagacgtcaagaaacaggaaatagagaaaca
ttaattggagaaaatgccaggaaggcttcattgttgttcaattctacgtcgcaattcaat
gatcttgattatttcttgaatcctgggaaagctactgctaggggaaaaaatgaatctaca
gtcaagattcctgatactagggcttcatttcccaagggaagcaaatctcattcagttcct
ggtatgaatgagaatatcaacgaccagaaattggaggaactgctaaatcttgcacctatt
gaggacaagtttaatatgacatcttcagaagctgcagataaagctgaagcttgcagcatc
cctttgcaacttccttatgcaccctatgcaacaaaaactgagaagactcaaggggacatg
atttatttccctgacatcgtcattattgtgaatactcaaaattttgacaaggaaatgata
gtatccagaagaagtacataccaaagaattcttgcgatggagaaagaaggagcacaagtt
gtggagcgtgacttgaatctgcctgttgacgtgattattagttcttccatttgcctagtg
tggtatgattgtggaaatattggaaagaaagcaactgctgcagatgaagcttcttcatgc
ttgcctctgtgcattgagaatattgctgcaaatgttttgacattgctgagtttcgctttc
agtggctgcattctggtctttgagggagaaaccagattcctctctactgtaatggaattc
tctgatggactctacgcagctgcagcaagcctgggaattgacctacagctcttttcttcc
tattcagctgaattgaccgatgaaattatattaaacagtattttgtatgccactaagtct
tccaggggcagatatcctaaaatgcctgaatcagaaactcttgcagaatccttccttacc
aaatttccatcaattaatccactgacagcacatgcaattctgtcttctggaggcatgctt
attgagtttcttgaatggtcacatgaacgcaggatccttgcagtccaacagtatcatgtt
ccagttgaaagtgttgctctgtttagtgctttgtgcaaatatggtgagcgggaggattct
agatccataatgacagactgttcctcctctgcatcttcttgtcctgactcagataaactt
catcttcatattgattctgaaagaaaacgaagaaaatgcataaatagccttcaaaaaatt
gacattcaagtggatgacatgtggaaatctgaatcactgaaccaattcactgatggtatg
ctggatcctggagtgtttaagcaatatgattgttggacttcaacagatcccgagatgctt
ggtgagttgaagcaacctagttcatctttgaaagatttgtttggtcaaaagcaggtaccg
gatattgctccggtgatggattttcctacttccataaaaccactttattctggaaacttc
aaagatcctctgattcgggatgacagaagacagcccaggttaccactgaacgatatattt
ctgggtcaaaatcgggcatccgaaataaatatcaagaaggagttgaagttagacagtggc
aatccctgtaaatctaacgctaacaacctgcatgaatactttagaggtgaagtcatagac
ctcactgatgatcccgtctcgttggagaaagacgttgcttctattgctaactctacatat
ttctcaccttggatgcctgatactgatatcgaacaagattctgcaagaaagtcgaaagct
gcaagacgactgtcatttggtaagaatagtcaccctaataatccaacggctgctgagaaa
aactcttgtccagatttatggacccctatagaaagtgatagacaaaggttaccacaaaat
cgtggtgatccaattatagatgataagcatgaaaaagtgcctgtaaaacccaggaaaaat
ctcttagaggaggcttttacactgagagctgcaggaaaatccactaggtttccatttgaa
gaggagatatcacattgcggtggaagtggaacaccactttctaaagccatccattctgct
catccacaaccaggttcaccctggacaatagagtttcttaacagagtaagggaaaagagc
agattgcggcagcagtcccttccacctgatacatgtactccagatttttggaattcagga
aatacatcaaaggctactgagagaagaagcctgtctattcttgattttttcaagtaccag
ggaggaagcactcctagaaaagtatatgagcagaagaagcagaaacaacctattcaattg
tcaagttcatcccagaaggaaagaacttccgcatccctaattccatcatggacacccaag
gataagagatcaaaacagactttatcctttgcaatggatggtggaaaccaaactaggctg
gtctggagtgatggaagtgcccaccgtatgagcaaaaagctcaggagaaattga
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