Populus trichocarpa (black cottonwood): 7484384
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Entry
7484384 CDS
T01077
Name
(RefSeq) 25.3 kDa vesicle transport protein isoform X1
KO
K08517
vesicle transport protein SEC22
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04130
SNARE interactions in vesicular transport
pop04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
7484384
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
7484384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7484384
Membrane trafficking [BR:
pop04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
Sec22
7484384
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GFIT
Motif
Pfam:
Longin
Motif
Other DBs
NCBI-GeneID:
7484384
NCBI-ProteinID:
XP_002318225
UniProt:
B9I498
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All DBs
Position
12:complement(15274574..15276322)
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AA seq
221 aa
AA seq
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MVKITIVGRVIDGLPLAQGPRYVNEENDNFLCYKQQGEFILKEISRGALIPSMMTIRIDH
HSLNYLIGNGACFMTLCDSSYPRKLAFHYLQDLQKEFERLDNSLVEKITRPYSFVKFDGV
IGSIRKQYIDTRTQANLSKLNANRKKDLEIITEHISEILQRKRNSEISERLPATTPRTAS
PVWGSPLLEVIALKWTPITTIVAVAAILLWASLVLTDNFII
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atggttaagataacaatagttggaagggtgattgatgggctgcctcttgcccaagggcct
aggtatgtgaatgaagagaatgataatttcttatgttacaagcaacaaggtgagttcata
ctcaaagaaatctcaagaggagccttgataccttccatgatgaccattcgcattgatcat
cactctctcaactacttgattgggaatggtgcctgcttcatgacattatgcgattcttca
tatccaagaaagctagctttccattatctacaagacttgcaaaaggagtttgagagattg
gacaatagcctagttgagaaaattacaagaccatatagttttgttaaattcgatggtgtt
attgggagtattaggaagcagtatatagacacgagaactcaggctaatctatcgaagcta
aatgcgaatagaaaaaaagatttagaaatcatcacagagcacatatcagaaattctgcaa
agaaaaagaaattcagaaatctccgaaagactaccggcaacgactccaagaacagcctct
cctgtctggggttctcccctgctagaggtgattgcactgaaatggacaccaattacaacc
attgttgcagttgctgctatcctgttatgggcaagcctagttctcacagataattttatc
atctag
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