KEGG   Populus trichocarpa (black cottonwood): 7484386
Entry
7484386           CDS       T01077                                 
Name
(RefSeq) WD repeat-containing protein RUP2
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04120  Ubiquitin mediated proteolysis
pop04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    7484386
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    7484386
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7484386
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     7484386
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7484386
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     7484386
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 EIF3I Beta-prop_EML Beta-prop_DCAF4 Beta-prop_TEP1_C WD40_like Beta-prop_DCAF12 Beta-prop_WDR75_1st Beta-prop_RIG_2nd WD40_RFWD3 YNR034W-A-like Beta-prop_SCAP MC5
Other DBs
NCBI-GeneID: 7484386
NCBI-ProteinID: XP_002318819
UniProt: B9I4A1
LinkDB
Position
12:15250574..15252139
AA seq 390 aa
MKNLSTKFHRHSHHHTQESENHEKEAIEEEQEQQEEKARCEWDFSLTTIVSSGNNNISST
PAISDALGVIEFDQTNSIIATGGIARKIRIYNFKSLFAHENTSQNAHEITCLDHARACDY
YICTPAKLSSIRWKPSSDGRVLGSGDYDGVVMEYCLERRIPIFERDEHGGRRVWSVDYSH
WDPVLGASGSDDGTMQMWDTRCESGEGVATVQPGVGRSAVCCVEFNPFGGPIVAVGCADR
RVYGYDIRMTGDPVFVLDGHRKTVTYIKFLDNVTLVSASIDGCLKLWDSDNSNVIRSYKG
HVNSRSFIGLSVWRNGGLLGCGSENNKVFVYDRRWGEPIWVHESNPVGRDGCGGGFVSSV
CWRQVEEDQCTLVAGGSDGDLQVFQGRRKS
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgaaaaacctctccactaaattccatcggcatagtcaccaccacacacaagaatctgaa
aaccacgaaaaagaagccatagaggaagaacaagaacaacaagaagaaaaagctaggtgt
gaatgggatttcagtctcacaacaattgtttcatcaggaaacaacaatatcagtagtact
ccagccatatcggatgctctaggggtgattgaattcgaccagacgaacagcatcattgcc
acaggtggaatagcaagaaagataagaatttacaacttcaagtctttgtttgcacatgaa
aatactagccaaaatgcgcacgaaattacttgcttagaccatgctagggcttgtgactat
tatatttgtaccccagctaagcttagtagcatccgatggaaacccagttcggacgggcgg
gttctagggtccggagactacgacggggtggtgatggaatattgtcttgagaggagaata
ccaatcttcgaacgagatgaacatggcgggcgacgggtttggagtgtggactactcacat
tgggatccggttttgggtgcatccgggtcggatgatggaaccatgcaaatgtgggacaca
cgttgcgagagtggggagggcgtggctactgttcagcctggtgtgggtcgcagtgccgtg
tgttgcgtggagttcaatccatttggtggaccaatagtagccgtcggatgcgctgacaga
agggtatacgggtacgacattcgaatgacgggtgacccggtatttgttcttgatgggcat
aggaagaccgtgacgtacattaaatttctcgataatgttacattggtgtctgctagcatt
gatggatgcttgaagctatgggattcggataattcaaacgtaatccggtcatacaagggg
cacgtcaacagccggagcttcatcggattgtcagtgtggaggaatggaggcttattaggg
tgtgggtcagaaaacaataaggtttttgtgtatgacagaagatggggcgagccaatatgg
gttcacgagtctaacccagtgggtagggatgggtgtggcggcgggttcgttagcagtgtg
tgctggaggcaagtggaggaagaccagtgcacgctcgtggcaggaggatcagatggggac
ttgcaagtttttcaaggcagaaggaagtcatag

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