Populus trichocarpa (black cottonwood): 7484397
Help
Entry
7484397 CDS
T01077
Name
(RefSeq) LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5
KO
K17604
zinc finger SWIM domain-containing protein 3
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pop01009
]
7484397
Protein phosphatases and associated proteins [BR:
pop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
7484397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAR1
MULE
ZSWIM1-3_RNaseH-like
Transposase_mut
SWIM
Motif
Other DBs
NCBI-GeneID:
7484397
NCBI-ProteinID:
XP_006377078
LinkDB
All DBs
Position
12:15093114..15097016
Genome browser
AA seq
881 aa
AA seq
DB search
MSDDSMEIGLQKSDKLDLNLDQDCRSLNFALVNSSQFSNSSKDGVNIGGVLKIGTEFESD
EHAYRFYNKYAKTVGFSVRKDWVNRSKVHGLVVSRKFTCSKEGYRRKDKRDLNVKKHRKE
TRTGCLAHMIVTRQPDAKYRVTHFEAEHNHDNIDPNNAESQLLWREIHVDQAAEGDLPSN
SGTESSSTFELVNRQFXSLESLDQLAMDFDNSLRSQRIRDMKEGEAGRLLRYFQRQHIEN
PSFIHSIQVDIDDKVSNIFWADDKMVVDYDHFGDVVCLDTSYRMNKDLQPFVQFIGVNHH
NQAIIFAAALLFDDTVESLKWLFNTFLEAMSGKKPKVILTDQDAAIVEAINSILPETSHR
ICVWQMYQNALKHLSLVVKDMESFSNDFRSCIYDYNNEEAFVHAWEGLLDKYGLQQNDRL
RWMFREREKWSIAYGRNTFFLDMKGSHVAEDLSNNLRSYLNSDQDALQIYKIFERVADEQ
RFKETHANDEMTRSMPRLLGNVALLKHASGIYTPKAFELFQKEYEKCLNVVVTQCNEKGF
LLEYKVSTFGQTQEYTVIFNSADDTVVCNCMKFENVGYLCGHALKVLDNWNIKVVPSRYI
LKRWTKDTRLGRVRDSGEFTAKENLKLAVASRYKDLCRNIIKISARAAESEDAFQFALRQ
LDELIEGVEKILMLKAEEGQGITSSSTVVNGFESENAEFFLDEEEIEDQGEDNRVDGTKE
KESAAPDRHQLKNINEKSCKKKRFQLRQTPSPNTSSCISSPPQARVMTEGQSHNPLLQGL
YNFEANQVVQCMYQQQNPVMDHEDNPNMYQQSVFYADQHVSPTQIPLLQEPLIRSAYHES
LTNNALFRQAMDLDLQHPQSSSILLYDHRFRTFDTSYLGLK
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgacagcatggaaatcgggcttcaaaagtcagataagttggacttgaactta
gatcaggactgtcgtagtctgaattttgcactggtcaattcatcccagttcagtaactca
tcgaaagatggtgttaatataggtggggtactaaaaattggcacagagtttgaatcggat
gaacatgcttatagattttacaacaagtatgccaaaacagtaggcttcagtgttcgaaaa
gattgggtgaataggagtaaggtgcatggtcttgtggtatctagaaagtttacttgctct
aaggaaggttaccggcggaaagacaagagagatcttaatgtgaagaaacatcggaaagaa
acaagaactggttgcttggctcacatgattgtcactcgccagcctgatgccaaatacaga
gtgacccattttgaggcagagcataatcatgataacatagacccaaataatgctgaatca
caactattatggagggaaatacatgttgatcaagctgccgaaggtgacttgcctagtaat
tcaggtacagaatcaagttcaacctttgaactggtgaacagacaatttngaagtttggaa
tctcttgatcaactggccatggattttgacaattccctgcggtctcaaaggattagagat
atgaaggagggggaggcaggacgtttgctgcgttatttccagaggcagcacattgaaaat
ccatcattcattcatagcattcaggttgatattgatgacaaagtaagtaacatattctgg
gctgatgataaaatggtagtggactatgatcattttggtgatgtggtttgtttggacaca
agttaccgaatgaataaagatcttcagccatttgtacagttcataggagtgaaccaccac
aatcaagcaataatttttgctgctgcacttttatttgatgacactgttgaatcacttaag
tggttgtttaatacatttctagaggcaatgtctggaaagaagccaaaagtcattcttaca
gatcaagatgcagcaatagttgaagcaatcaattcaattttacctgaaacaagccatcgt
atctgtgtttggcagatgtaccaaaatgctcttaagcatcttagccttgtagtgaaggat
atggaatccttttctaatgactttcgaagttgtatttatgactacaataatgaggaggct
tttgttcacgcttgggagggtctgctggacaaatatggtcttcaacaaaatgaccggcta
agatggatgtttagagaaagagagaaatggtccatagcatatggcaggaacacatttttt
cttgacatgaaaggctcgcatgtggctgaagatttatctaataacttgagaagttaccta
aactctgaccaagatgctcttcagatttacaaaatttttgaaagggtggcagacgagcaa
cgcttcaaagaaacacatgctaatgatgaaatgactagatccatgccaagattactgggg
aatgtagctttgctaaagcatgcaagtggtatttatacgccaaaggcttttgaattattt
cagaaggaatatgagaagtgtttaaatgttgtagttacccagtgcaatgagaaaggattt
ttgcttgaatataaagtcagtacatttggacagactcaagaatatacagtcatattcaat
tcagcagatgacacagttgtttgcaattgcatgaaatttgagaatgttgggtatttatgt
ggccatgctttgaaagttcttgataactggaacataaaggtggtcccgtcccgatatatc
ttgaagagatggacaaaagatacaaggctcggaagagtaagagatagcggtgagttcact
gctaaagagaacctgaagttggctgtagctagccgttacaaagatttgtgccgcaacata
atcaaaatatcagccagagcagctgaatcagaggatgcgtttcagtttgcattaagacaa
ctagatgagctaattgaaggtgtagagaagatcttgatgctgaaagctgaggagggtcaa
ggcatcacctctagtagcacagtggtgaatggttttgaaagtgaaaatgctgagtttttc
ttggatgaggaagaaattgaggatcaaggcgaagacaacagagtggacggaaccaaagaa
aaggagagtgctgctcctgatagacatcaactgaagaatataaatgaaaagagctgtaag
aaaaaaagatttcagcttcgacaaacaccttcaccaaatactagcagctgcatttcaagt
cctccacaagcacgtgttatgactgaaggccaatctcacaatcctcttctgcagggtttg
tataattttgaggctaatcaggtggttcagtgcatgtaccagcagcagaatccagtaatg
gaccatgaagataatcctaacatgtaccaacaatcagttttttatgctgaccagcatgtc
tcacctactcaaattccattactccaggaacccttaatccggagcgcctaccacgagtcc
ctcactaacaatgctctatttaggcaggcaatggatctcgatctccaacatcctcaatca
tcttcaatcttactatatgatcatagattcagaacttttgacacttcttatcttggactc
aagtaa
DBGET
integrated database retrieval system
