Populus trichocarpa (black cottonwood): 7484424
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Entry
7484424 CDS
T01077
Name
(RefSeq) cell division cycle protein 48 homolog isoform X2
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
7484424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7484424
03009 Ribosome biogenesis [BR:
pop03009
]
7484424
04131 Membrane trafficking [BR:
pop04131
]
7484424
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pop04147
]
7484424
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
7484424
Ribosome biogenesis [BR:
pop03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
7484424
Membrane trafficking [BR:
pop04131
]
SNARE
SNARE associated proteins
Others
7484424
Autophagy
Aggrephagy
Other aggrephagy associated proteins
7484424
Exosome [BR:
pop04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
7484424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_33
AAA_5
AAA_22
AAA_14
NPHP3_N
TIP49
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Vps4_C
NACHT
AAA_7
Viral_helicase1
NB-ARC
TsaE
AAA_lid_PRS2_C
ResIII
DUF815
AAA_24
Zeta_toxin
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
7484424
NCBI-ProteinID:
XP_002318682
UniProt:
B9I3G9
LinkDB
All DBs
Position
12:complement(11361583..11366283)
Genome browser
AA seq
810 aa
AA seq
DB search
MADPSSSQPSPSTDPKKDYSTAILERKKSPNRLVIDEAINDDNSVVAMHPATMEKLQFFR
GDTVLIKGKKRKDTVCIVLADEQCEEPKIRLNKVVRANLRVRLGDVVSVHQCPDVKYGKR
VHILPIDDTIEGVTGSLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEY
CVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG
VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE
KNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSID
PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERVAKDTHGYVGADLAAL
CTEAALQCIREKMDVIDLEDETVDAEVLNSMAVTNDHFQTALGTSNPSALRETVVEVPNV
SWEDIGGLENIKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE
CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSSGDAG
GAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEASRL
QIFKACLRKSPVSRDVDLAALARYTHGFSGADITEICQRACKYAIRENIEKDIEKEKRKQ
DNPEAMEEDDVDEVPEITAAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGTEFRF
PDRAENVAGEGATDPFAPATIAAEEDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggccgatccaagctctagtcagccctctccttccacagaccctaagaaagattattcg
actgcaattttggagcgaaagaagtctcccaatcgacttgttattgacgaggccatcaat
gatgataactctgtggtggctatgcatcctgctaccatggaaaagcttcagttttttcgt
ggtgacactgtgctaattaagggaaagaagcgaaaagacactgtttgcattgttcttgct
gatgaacaatgtgaggaaccgaaaatcagattgaacaaagttgtcagggctaatcttaga
gtccgccttggagatgttgtgtctgtccatcaatgtcctgatgtgaagtatgggaagcga
gttcatatccttcctattgatgacactatcgagggtgttactggaagtctttttgatgca
tatttaaagccatatttcttggaatcgtaccgccctgtaagaaaaggtgaccttttcctt
gtcaggggtggcatgcgcagtgttgagttcaaagtaattgagacagaccctggtgaatac
tgtgttgtggcaccagacaccgagatcttttgtgaaggagagcccatcaaacgtgaggat
gaggagaggttgaatgaagtgggctatgatgatgttggtggtgttaggaaacagatggct
cagattcgtgagctagttgaacttcctcttaggcacccacagcttttcaaatcaattggt
gttaaaccaccaaaaggtatcttgctgtatgggccacctgggtctggtaaaactctgatt
gcaagagctgttgctaatgagacaggtgcattcttctttttgattaatggtcctgagata
atgtcaaagctggctggtgagagtgaaagcaacttgaggaaggcatttgaggaagctgaa
aagaatgctccatccataatttttattgatgagttagattctattgctcccaagagggaa
aagactcacggtgaagtggagaggcgtatagtttcacagcttttgactttaatggatggc
ctcaagtcacgggcacatgtgattgttatgggagctaccaataggcccaatagcattgac
ccagctttgaggagatttgggagatttgatcgagagattgacattggtgtgcctgatgaa
gttggacggttggaggtccttagaattcatactaaaaatatgaaacttgctgaagatgtt
gatcttgaaagagttgcaaaagatacccatggttatgttggtgctgatcttgcagctctt
tgtactgaggctgctcttcagtgtattagggagaaaatggatgttattgatttagaggat
gagacagttgatgccgaggtgttaaactcaatggctgtgactaatgaccacttccaaact
gcattgggaacttcaaatccatctgcgttgcgcgaaacagttgtggaggttcctaacgtc
tcatgggaggatattggtggattagagaatattaaaagagagcttcaagagactgtccaa
tatcccgtggagcatcctgagaagtttgagaaatttggcatgtcaccttctaaaggtgtt
ctcttttatggacctcctggctgtggtaaaaccctacttgcaaaggcaattgctaatgaa
tgccaggccaacttcataagtgtcaagggtcctgagctgctaactatgtggtttggagaa
agtgaagcaaatgtgcgggagatatttgacaaagcacggcagtcagctccttgtgtactt
ttctttgatgaacttgattccattgctactcagcggggcaactcttctggagatgctggg
ggagctgcagatagagtcttgaatcaacttctgacagaaatggatggcatgacggcaaag
aaaacagtttttatcattggtgcaacaaacaggccagatattatcgacccagcattgctc
aggcctgggcgtctggaccagttgatttatatacctcttcctgatgaggcttcccgtctt
cagatatttaaagcatgtttgcgcaagtcacctgtttctagggatgttgacctggcagct
cttgcacgatatactcatggatttagtggtgctgatatcactgaaatttgtcaacgtgcc
tgcaaatatgccattagagaaaatattgagaaggatattgagaaggagaaaaggaagcaa
gacaatcctgaagcaatggaagaagatgatgtggatgaggtcccagaaataacggcagca
cattttgaggagtcaatgaaatttgcacgtcgaagtgtcagtgatgcagacatcaggaag
taccagctctttgctcagaccttacagcaatctcgtggatttggtactgagttccggttt
ccagaccgtgctgagaatgtggcaggtgaaggagccactgatccatttgctccagcaact
attgctgccgaggaggatgatctatacagctga
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