Populus trichocarpa (black cottonwood): 7484524
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Entry
7484524 CDS
T01077
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00040
Pentose and glucuronate interconversions
pop01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
7484524
Enzymes [BR:
pop01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
7484524
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
7484524
NCBI-ProteinID:
XP_002317132
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Position
11:complement(611041..612997)
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AA seq
393 aa
AA seq
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MASLAYVLLLSFLATLFASTLQDDSLEYKPKPLSSYLPSNYKKVLNTIDSCWRTESNWAT
DRRALADCAVGFGQAAIGGKYGKTYVVTTPDDDPTDPKPGTLRYGAIQTEPLWIIFDKDM
VIKLENELMINSFKTIDGRGSNVEITDGPCLKIEGVSHVIIHGISIHDCKPGKRGLVRSS
PTHVGQRRGADGDAISIFASSHIWIDHCYLARCIDGLIDVIHASTAVTISNNYFAQHDKV
MLLGHNDEYTADKVMKVTVAFNHFGPGLIERMPRVRFGYAHVANNRYDEWQMYAIGGSAG
STIFSEGNYFIAPDISYAKEVTKREADGGWKNWKWRSSSKDVFMNGAYFVPSGYGSCAPL
YSEAQSFVVFPGTMVPSLTSDAGPLTCVVGHAC
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcctcactagcatatgtcctattgctttcatttcttgccacactctttgcttcaacc
ttgcaagatgattcactcgaatacaagcctaaacccttatcaagctatcttccaagcaat
tataagaaagtcttgaacaccatagactcatgctggcgcacggagtccaactgggctacc
gatcgtcgtgcattggctgattgtgctgtgggatttggccaagctgcaatcggagggaaa
tatgggaaaacatacgttgtcaccaccccagatgacgatcctaccgatccgaaaccaggc
acacttcggtatggtgctatccaaactgagcctctttggatcatttttgacaaagacatg
gtgattaaacttgaaaatgagcttatgataaatagtttcaagactatagatggaagaggg
tctaatgtagagattacagatggaccatgcctaaaaattgaaggtgttagtcatgttatc
atacatgggattagcattcatgactgtaagccagggaaacgggggcttgtcaggagtagt
ccgacgcatgttggccaacgccgcggtgctgacggagatgccatttccatttttgcatct
tctcatatttggattgaccattgctatcttgctcgttgcatcgatggcctaattgatgta
atccatgcttctactgcggtcaccatatccaacaactatttcgctcagcatgataaggtg
atgttgcttggacataatgatgaatatactgctgataaagttatgaaagtaacagttgcc
ttcaatcattttggccctggactcattgaaagaatgccaagagtaaggtttggctatgct
catgttgccaacaatagatatgatgaatggcaaatgtatgccattggcggtagtgctggt
tcaaccatatttagtgaagggaactactttatagctcctgatatttcctacgccaaggag
gttacaaaaagagaggctgatggtggctggaagaattggaaatggaggtcatcatccaag
gatgtatttatgaatggtgcttactttgttccatctggatatggaagttgtgctccactc
tattccgaagctcagtcctttgtagttttcccaggaactatggttccttctttaacatct
gatgcaggccccttaacctgtgttgttggacatgcttgttga
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