Populus trichocarpa (black cottonwood): 7484706
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Entry
7484706 CDS
T01077
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
7484706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pop03400
]
7484706
DNA repair and recombination proteins [BR:
pop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
7484706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
7484706
NCBI-ProteinID:
XP_002317931
UniProt:
B9I2Q3
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All DBs
Position
12:6041613..6050085
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AA seq
944 aa
AA seq
DB search
MGENKNFEEQNKLPELKLDAKQAQGFLSFFKTLPHDPRAVRVFDRRDYYTVHAENATFIA
KTYYHTTTALRQLGSGSNGLSSVSISKNMFETIARDLLLERTDHTLELYEGSGSNWKLVK
SGTPGNLGSFEDVLFANNDMQDSPVVVALLLNFREKGCTVGLSYVDLTKRVLGLAEFLDD
SHFTNVESALVALSCKECLLPMESGKSNDCRTLHDVLTKCGVMLTERKKNEFKTRDLVQD
LGRLVKGPLEPVRDLVSGFEFAPGALGALLSYAELLADESNYGNYRIRKYNLDSYMRLDS
AATRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLEVDAINSRLDLVQ
AFVDDTGLRQDLRQHLKRISDIERLMHIVEKGRAGLHHIVKLYQSIIRLPYIKGALERYD
GQFSSLIKEKYLESLEVWTDDNHLNKFIALVETAVDLDQLDNGEYMISPGYEAALGALKA
EQESLEHQIHNLHKQTASDLDLPLDKGLKLDKGTQYGHVFRITKKEEPKIRKKLTTQFIV
LETRKDGVKFTNTKLKKLGDQYQKIVENYKSRQKELVSRVVQITATFSEVFEKLSGLLSE
MDVLLSFADLASSCPTPYTRPDITPSDVGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGK
SWFQIITGPNMGGKSTFIRQIGVNILMAQVGSFIPCDKATISVRDCIFARVGAGDCQMRG
VSTFMQEMLETASILKGATDRSLIIIDELGRGTSTYDGFGLAWAICEHLVRELKAPTLFA
THFHELTALAHQKPDQEPHAKQIVGVANYHVSAHIDSSNHKLTMLYKVEPGACDQSFGIH
VAEFANFPESVVTLAREKAAELEDFSPTAIISDDAREEVGSKRKRECNMDDMSKGAARAH
RFLKDFSDLPLDTMDLKQALLQIGKLKDDLEKDAVNCHWLQQFF
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaaataaaaattttgaagaacagaacaagctccctgagctcaagctagatgct
aagcaggctcaagggtttctctctttcttcaaaaccctaccccatgaccctagggcggtt
cgggtctttgataggcgggactattatacagttcatgctgaaaatgcgaccttcattgca
aagacatactaccacactacgactgctttgcgccagttggggagtggatctaatggtctt
tctagtgtgagcattagtaagaacatgtttgaaacaattgcccgggatcttcttttggag
agaacagaccatactcttgagctctatgaagggagtggatccaattggaaactagtgaaa
agtgggactcctggaaatcttggcagttttgaagatgttttgtttgcaaacaatgacatg
caggattctcctgtggttgttgcactcttgttaaacttccgtgaaaaagggtgcactgtt
gggttgagttatgttgatttaacaaaaagagttcttgggctggctgaatttctagatgat
agccactttacaaatgtggagtcagctttagttgccctcagttgcaaggaatgccttttg
cccatggagagtggcaagtccaatgactgtagaactctgcatgatgttttgaccaaatgc
ggtgtgatgttaactgagagaaagaaaaatgaattcaaaacaagagatttggtgcaggat
cttggtaggcttgtcaaaggtccccttgaaccagtccgagatctagtttctggttttgaa
tttgcacctggtgctttgggagcattattgtcctatgcagaattacttgcagacgagagc
aattatggtaattatagaattagaaagtacaatcttgacagctacatgagacttgattct
gctgccacgagggcactgaatgtccttgaaagcaaaactgatgcaaacaaaaattttagt
ttatttggtctcatgaatagaacttgtacagctggaatgggaaaaagattgcttcatatg
tggctaaaacagcctttattggaagtagatgcaatcaactccaggctagatttggtgcag
gcatttgtggacgataccgggcttcgccaagatctaagacagcatctgaaaagaatctca
gatattgaacgactgatgcacattgttgagaaaggaagagctggcttgcaccatattgtg
aaactttatcagtccatcataagactgccatacattaaaggtgctctggaacgatatgat
ggccaattttcatcccttatcaaggaaaagtatttggagtcccttgaggtgtggactgat
gataaccacttgaataagttcattgctcttgtggaaactgctgttgacctagatcaactt
gacaatggggaatacatgatttcacctggttatgaagctgccttaggtgcactaaaagct
gaacaggagtcattggagcaccagatacacaatttgcataaacaaactgcttccgatctt
gaccttcctctagataagggattgaagttagataagggaacgcaatacggtcatgtcttc
cgaattacaaagaaggaagagccaaaaatacggaaaaagctgaccacccagtttattgtc
cttgaaactcgtaaggatggggtaaaattcacaaacacgaaacttaaaaaattaggtgac
cagtaccaaaagatagttgagaactataagagtcgtcagaaggagcttgtcagtcgagtg
gttcaaattacagcaactttctctgaggtgtttgagaaattatctggcttgctttctgaa
atggatgtcttacttagttttgctgatttggcttctagttgtcctactccatacacaagg
cctgacatcactccatctgatgtgggagatattatattagaagggagtagacatccatgt
gtggaagctcaggattgggtgaattttattccaaatgattgtaaacttgtcaggggaaag
agttggttccaaataatcacagggcctaatatgggtgggaaatccacatttattcggcaa
ataggtgtgaatattctcatggcccaagttggttctttcattccctgtgacaaggctacc
atttctgtacgtgattgcatttttgcacgtgtgggtgctggtgattgtcaaatgcgtgga
gtttctacttttatgcaagaaatgcttgaaactgcttcaatccttaaaggagctacagat
aggtcattgataatcattgatgagttaggccgcgggacatcaacttatgatggatttggc
ttggcatgggccatatgtgaacacctggttcgagagttaaaagcacctactttatttgca
acccactttcacgaactgactgcattagctcatcaaaaacctgaccaggagccacatgcg
aagcaaattgttggtgttgcaaactatcatgtcagtgcacacatcgactcatcaaatcac
aagttgaccatgctgtacaaggttgagccaggggcttgtgatcaaagttttggtattcat
gttgcagaatttgcaaactttcctgaaagtgttgtcacccttgcccgagaaaaggcagct
gaattggaagatttctcacctactgcaatcatttcagatgatgctagagaagaggtcgga
tccaaacgaaagagagagtgcaatatggatgatatgtcaaaaggtgcagctcgggctcac
cggtttctgaaggacttctctgatttgccattagacacaatggacttgaagcaggctctg
ctacagataggcaaactgaaagatgacttggagaaagatgcagtgaattgccattggctc
cagcaattcttctag
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