Populus trichocarpa (black cottonwood): 7484720
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Entry
7484720 CDS
T01077
Name
(RefSeq) pre-mRNA-splicing factor SLU7-A
KO
K12819
pre-mRNA-processing factor SLU7
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
7484720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pop03041
]
7484720
Spliceosome [BR:
pop03041
]
Complex C
Other components
Step II factors
7484720
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Slu7
zf-CCHC_4
Tudor_3
Motif
Other DBs
NCBI-GeneID:
7484720
NCBI-ProteinID:
XP_002318579
UniProt:
B9I2T5
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Position
12:complement(7676677..7680987)
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AA seq
536 aa
AA seq
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MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAEKP
SLKHQRKWKSDPNYTKSWYDRGAKVFQAEKYRKGACINCGAMTHDAKSCVERPRKVGAKW
TNTHIAPDEKIETIELDYDGKRDRWNGYDPSSYAHVVERYEARDAARRKHMKEQQLKKLE
EKNGNQNVEDGVSDVDNDEDDLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRI
REDTAKYLLNLDVDSAHYDPKTRSMREDPLPDADPNEKFYGGDNRYRNSGQALEFKHLNI
HAWEAFDKGQDIHMQAAPSQAELLYKNHKVIKDKLKTRTKDTIMEKYGNAASEEEIPREL
LLGQSERQVEYDRAGRIIKGQETVLPRSKYEEDVFINNHTTVWGSWWKDHQWGYKCCKQM
IRNSYCTGAAGIKAAEAATDLMKTNIDRKEATEEAPAPVEERRLATWGTEVPEDLVLDEK
LLAEALRKEDQRKREEKDERKRKYNVRWNDEVTTEDMEAYRMKKVHHDDPMKDFLH
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccgcatcagttgcatttaagtctagagaggaccataggaagcagattgaattg
gaagaagcgcgtaaagctgggcttgcccctgctgaggttgatgaagatggaaaggagatt
aatcctcatattcctcagtatatgtcatctgcaccttggtatcttaatgccgagaaacct
agcttgaaacatcaaaggaagtggaaatcagatcctaattatacaaaatcatggtatgac
agaggtgccaaagttttccaggccgaaaaatatagaaagggtgcatgcatcaactgtgga
gcaatgacacatgatgcaaagtcatgtgttgaaaggcccaggaaagttggtgcaaagtgg
actaacacacatatagcccctgatgaaaaaatagagacgattgagcttgattatgatggc
aagcgagaccggtggaatggttatgacccatcaagctatgctcatgttgttgaaagatat
gaagctcgagatgcagctcgaaggaagcacatgaaggaacaacaacttaagaaattggag
gagaaaaatggaaatcaaaatgttgaggatggtgttagcgatgtggacaatgatgaggat
gatttaagggtagatgaagccaaggttgatgagagcaaacaaatggactttgcaaaggtt
gagaagcgtgtgcgaacaacaggtggtgggagcacaggaactgttaggaatttacgtatt
cgcgaggacacagcaaaatatcttttaaatcttgatgttgactctgcccactatgacccc
aaaacccgctctatgcgtgaggatcctcttccagatgcggatccaaatgaaaaattctat
gggggagataaccgatatagaaatagtggtcaagcattggagttcaagcatctcaacatc
catgcttgggaggcatttgacaagggacaagatattcacatgcaagcagctccatcacaa
gctgagttgctatataaaaatcataaggtcataaaagataagttgaagacccgaacaaag
gacactattatggagaagtatggcaatgcggctagtgaagaggaaattccaagagagctt
ctattgggccagagtgaaagacaagttgaatatgatcgtgctgggcggattatcaaggga
caggagactgtgcttcctagaagcaagtatgaagaagatgttttcattaataatcacaca
accgtgtggggatcatggtggaaggatcatcaatggggctacaagtgctgcaagcagatg
attcggaacagttattgcacgggtgctgctggaataaaggctgctgaggctgcaactgat
cttatgaagactaatattgatcgtaaagaggcaactgaagaggcacctgcaccagtggag
gagagaaggcttgctacctggggaaccgaggttccagaagatttggttttggatgaaaag
ttacttgctgaagcgcttagaaaggaagatcaaagaaagagagaggagaaggatgagagg
aagcggaaatacaatgtcaggtggaatgatgaggttactactgaggatatggaggcatat
aggatgaagaaagtacatcatgatgacccaatgaaggatttcctccattaa
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