Populus trichocarpa (black cottonwood): 7485028
Help
Entry
7485028 CDS
T01077
Name
(RefSeq) KH domain-containing protein HEN4 isoform X1
KO
K21444
poly(rC)-binding protein 3/4
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7485028
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
7485028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH-I_KHDC4-BBP
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-GeneID:
7485028
NCBI-ProteinID:
XP_002310483
LinkDB
All DBs
Position
7:13586476..13595693
Genome browser
AA seq
747 aa
AA seq
DB search
MASSFSPFLSPPAKRPVYYSTILPDPNPNSTNGYSANKRSKPHPSTSAAPSPVPSGHVLF
RLLCHESRIGGIIGKGGNIIKGLQQQTGAKIRIEDAPLESPDRVITIVGSVTQSSVVFSG
IGSAIEVSKGQEALVRVFERILEVAAESDSVAGGLVSCRLLAEISSVGAVIGKGGKTVEK
IRKDCGCKVKVLIDKLPACASSNEEMIEIEGDVSAVKKGLVAVSHRLQDCQPVDKTRVIS
SKPVEAVSRVSFPEVGVEILPQHSAVRPTIAQHSVAPPTVTNSSIDYASGTHLFSLESER
VSTLDTSTPQQQVVFRILCNNDRVGGVIGKGGNIVTALQNETGATISIGPKVAGCDERLI
TVTASENPESRYSAAQKTVVLVFSRVVESVIEKGLDPGSSEGSPVSVRLVVSPNQVGCLL
GKGGTIISEMRKATSTSIRIIGRDQGNPKCVPENDHVVEILGDFLNVKDSIYHITGRLRD
NLFSSILGTPGARSSSSVLAETSPYVRSMDPVRDAKRDSLRDPLWEPLRDITRDPLRDSL
RDFMRDPLRDPLRDEFRDSLRETVRDPLREPVRDPLRGPGRGPLRELGRDSASFLQPMVG
ISHNLNRQTVITQSMDHLGFSRSLDHSPSPRLWGSQTIPGVNPRGISDLSGGLPSFKAGL
DDLVSGGKSAFVTNTTVEIVIPEHTFGSVYGENGSNLARLRQFSGAKVIVHEPRLGTSDR
IIVISGTPDETQAAQSLLHAFILTGQY
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagcttcagtccttttctctctccaccagcaaaacgccccgtatattactcc
accatcttgcccgacccgaacccgaattccacaaacggatactccgcaaacaaacgctcc
aaaccccacccctctacttcagctgctccgtcaccagtcccgtcgggccacgtcttgttc
cgtctactctgtcacgagtcaagaattggtggcattataggaaagggcggcaacataata
aaaggcttgcaacaacaaaccggagctaagatccggatagaagatgctccactcgaatca
ccggatcgggtgataacgatagttggttcagttacgcaatcgtcggtggtatttagtgga
attgggagtgcaatcgaggtttccaaggggcaggaggcattggttagggtttttgagagg
atattagaggtggcggcggagagtgattcggtggcgggtgggttggtttcttgcaggttg
ttggcggagataagttcggttggggcggttattgggaaagggggaaaaacagtggagaag
attaggaaagattgtgggtgtaaagttaaggttttgattgataaattacctgcttgtgct
tcttctaatgaagagatgattgagattgaaggggatgtttcagctgtaaagaaaggactt
gttgcggtttctcaccgccttcaagattgtcaaccggttgataaaacaagggtgatcagc
agcaaacctgttgaggcagtttccagagtctcttttcctgaagtgggtgtagaaattctt
ccacagcattctgcagtgcgacccaccatagcacaacattccgtagcgccacccactgta
acgaatagctccattgattatgcttcaggaactcatcttttttcgttggagtccgagagg
gtcagcactctggacacaagtacaccacaacagcaagtggtttttagaattctgtgtaat
aatgatagggttgggggtgttattggaaaaggtggcaacatagtcacggctcttcagaat
gagacaggtgctactataagcattggacctaaggtggctgggtgtgatgagcgactaatc
actgttactgcatctgagaacccagagtctcggtactcagctgcacagaagactgttgtg
cttgttttctcgagggttgtggagtccgtcattgaaaagggtctagatccaggctcaagc
gaggggtcccctgttagtgtgaggctcgtggtttccccaaaccaagttggctgtttgttg
ggaaaaggaggcacaataatttcagaaatgcggaaggcaaccagtaccagcatacgaata
atagggcgtgaccagggtaaccctaagtgtgtgccagagaatgatcacgtggtagagatt
ttgggagattttttgaatgtgaaagactcaatataccacattactggaagactcagagat
aatcttttctctagcattctgggtactcctggagcaaggagcagttcttctgtattagct
gagaccagcccctatgtgagatcgatggacccagtgagggatgccaagagggattcgctg
agggatccattgtgggagccactgagggatattacgagggatccattgagagactcactg
agggattttatgagggatccattgagagaccctctgagggatgaatttagggattcgttg
agggaaactgtgagggatcctttgagggaaccagtgagggatcctttgaggggacctggg
aggggtccattgagggagctagggagggattctgcctcttttttgcagccaatggtgggc
atttctcataatctaaatcgccaaactgttataacacagagtatggatcatcttggattt
tcacgtagtttagatcattctccttcaccaaggttatggggatcacagacaatacctgga
gtaaatccacggggcatatcagatctcagtggaggactgccttcttttaaagctggccta
gatgatcttgtcagtggaggtaagtctgcttttgttacaaatacaactgtagagatcgta
attcctgagcatactttcggctctgtatatggggagaatggtagcaatctagctcgtttg
agacagttctcaggtgccaaggtaatagtgcatgaacctcgtctaggaacaagtgacagg
attattgttatatctgggacccctgatgaaacccaagcagctcagagcctccttcacgca
ttcatcctcactggacaatattga
DBGET
integrated database retrieval system
