KEGG   Populus trichocarpa (black cottonwood): 7485125
Entry
7485125           CDS       T01077                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7485125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7485125
   03041 Spliceosome [BR:pop03041]
    7485125
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     7485125
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     7485125
Spliceosome [BR:pop03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    7485125
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 BRAP2
Other DBs
NCBI-GeneID: 7485125
NCBI-ProteinID: XP_024444222
LinkDB
Position
1:complement(38808330..38810896)
AA seq 348 aa
MGSRSKIDNPHTGDGASPGKIFIGGLAKDTTYATFNKHFGKYGEITDSVIMKDRYTGQPR
GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVTE
DEFQNFFSKHGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMLSNGNMIDMAGTQVEI
KKAEPKKASNPPSAPSYGSNTRGRSFNSDNYGGFNGPYGGFDGGFGPGPYRTPGLSSRLS
SAYGYGSGGGDFGGGYGNFGGTSLGGYRAEASLGYSGRYPPYGGGFGGGYGASGLGGYGR
GGEGYGNYGASGYTSAYESGPGTSYGGAGGLYGRGGYTGSSRYHPYAR
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgggttccagatcaaagatcgacaatccccacactggcgatggagccagccccgggaag
atttttattggaggattggcgaaagacaccacttatgctacatttaacaagcactttggg
aaatatggggagattactgattctgttattatgaaggatcggtacactggtcaacctagg
ggttttggatttataacctatgctgatccttctgttgttgacaaggttattgaagacact
catgtgatcaatggaaaacaggttgagattaaaaggactattcctaaaggttctgggcag
tcaaaggattttaaaacaaagaagatttttgttggtgggattccatcttctgtgactgaa
gatgagtttcagaattttttttccaaacatgggaaagtagttgaacaccagattatacgt
gatcatgaaaccaaccgttcacgtggatttggatttataatttttgacagtgaagaagtt
gttgatgaaatgttatccaacggaaatatgattgatatggctggtacccaggtggagatc
aagaaagctgaaccaaagaaagcctcaaacccaccatctgctccttcatacggtagcaat
actaggggtcgttctttcaatagtgataattatggtgggttcaatggtccgtatgggggg
tttgatggcgggtttgggcctggcccttataggacacctggcctgtctagtagactcagt
agtgcatatggctatggtagtggtggtggggactttggtggtggctatggaaattttgga
gggactagcctaggaggttacagagctgaagcctcccttggttattctggtcgctatccg
ccttatggaggtggtttcggtgggggttatggtgctagtggcttaggaggatatggtcga
ggaggtgagggatatggaaattatggagcttctggttataccagtgcttatgaatctggt
ccaggtactagttatggaggagcaggtgggctgtatggaaggggaggctatactggcagt
agtcgttaccatccttatgcaaggtag

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