Populus trichocarpa (black cottonwood): 7485168
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Entry
7485168 CDS
T01077
Name
(RefSeq) long chain base biosynthesis protein 1
KO
K00654
serine palmitoyltransferase [EC:
2.3.1.50
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00600
Sphingolipid metabolism
pop01100
Metabolic pathways
Module
pop_M00094
Ceramide biosynthesis
pop_M00099
Sphingosine biosynthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
7485168
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pop01007
]
7485168
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.50 serine C-palmitoyltransferase
7485168
Amino acid related enzymes [BR:
pop01007
]
Aminotransferase (transaminase)
Class II
7485168
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Aminotran_1_2
OKR_DC_1
Cys_Met_Meta_PP
Aminotran_5
Motif
Other DBs
NCBI-GeneID:
7485168
NCBI-ProteinID:
XP_002318306
UniProt:
B9I4S7
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All DBs
Position
12:3928014..3934165
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AA seq
485 aa
AA seq
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MDTMASNVLQLLDSTLERVTSALDFPSARAVVFGVHIGGHLFVEVLLLVVILFLLSQKSY
KHPKRPLTKKEIDELCDEWVPESLIPPITDEMRYEPPVLESAAGPHTIINGKDVVNFASA
NYLGLTGHEKQIDSSTSAMEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSIIYSY
GLSTMFSTIPCFCKKGDIIVVDEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNALEKITV
ENKRAKELRRYIVVEAVYQNSGQIAPLNEIIRLKEKYLFRVLLDESNSFGVLGRSGRGLT
EYHGVPIEKIDIVTADMGHALATEGGFCTGSSRVVDHQRLSSSGYVFSASLPPYLASAAI
TAIDVLEDNPALIEKLKENIAILWKGLSNIQGLSISSNPKSPIVFLNLEKSTGSTKDDLK
LLEAMADRALKEDSVFVVTTKRSTLDKCRLPVGIRLFVSAAHSDSDLLKACESLKRVAAL
VLMNQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggataccatggcttcaaatgttttgcaattactggatagcactttggagagggtgaca
tcggctttggattttccatctgcgagagctgttgtttttggtgttcatattggagggcat
ctttttgtggaggttcttcttttagtggtcattctttttcttctttcccagaaaagttat
aagcatcctaagcggcccttaacaaagaaggaaatagacgagctatgtgatgaatgggtt
ccagaatcccttattcctcctattacagatgagatgcgatatgagccaccagtattggaa
agtgctgctgggccacataccataatcaatggcaaagatgttgtaaactttgcctcagct
aattatcttggtctaacagggcacgagaaacaaattgattcaagtacctcggccatggaa
aaatatggtgttggttcctgtggtcctcgtgggttctatggaacaattgatgtccacctt
gattgtgaggccagaatagccaagtttctgggaactcctgattcaattatctattcatac
ggactttccactatgttcagtacaattccatgtttttgcaaaaaaggagacataattgtt
gtggatgagggagtccattggggaatacagaacggcctgtatctttccagaagcaccatt
gtgtatttcaagcacaatgacatggaatctctacgaaatgctttggagaaaattacagta
gagaacaagcgggccaaggagttgcgacgctatattgtagttgaagctgtgtaccagaac
tctggccaaatagcccctttaaatgagatcatcagattgaaggagaaatatctcttccgt
gttttgttggatgagagcaactcatttggtgtgcttggcaggtctgggagaggtcttact
gaataccatggggtgccgattgagaagatagatattgttactgcagatatgggccatgca
ttagccactgaaggaggattctgcactggaagttccagagtcgtcgatcatcaacgactt
agcagttctggatatgtgttttctgcttctcttccaccatatcttgcaagcgctgcaatt
accgctatcgatgttctggaggataatcctgctttaatagaaaaattgaaagaaaacatt
gccatcttgtggaaaggattgtccaacatacagggtctctctataagcagcaatcctaaa
tcgcctattgtttttctcaacctagagaagtccacaggttccactaaagatgaccttaaa
ctccttgaagctatggctgatcgggcattgaaggaagactctgtatttgttgtaaccaca
aagagatcaacacttgataaatgtcgtttgcctgtgggaatcagattgtttgtatctgcc
gctcattcagattctgatctgctcaaggcatgtgaatccttgaagagggttgcagcattg
gtgctgatgaatcaatga
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