Populus trichocarpa (black cottonwood): 7485204
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Entry
7485204 CDS
T01077
Name
(RefSeq) nuclear pore complex protein NUP93A
KO
K14309
nuclear pore complex protein Nup93
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7485204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7485204
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
7485204
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nic96
TPR_2
Motif
Other DBs
NCBI-GeneID:
7485204
NCBI-ProteinID:
XP_002317735
UniProt:
B9I510
LinkDB
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Position
12:complement(3109215..3121025)
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AA seq
863 aa
AA seq
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MGSEQDMSNWTDLLHSSTKLVEQAAPSAQFPPLQRNLDQLEALSKKLKAKTIRTEAPSQS
IAATRLLAREGINAEQLARDLKSFELKTTFEDVFPAEATSVEEYLQQVHEMAMVSAIQEA
QKDNVRSFNDYMMKVLEEDWQKERRDFLQSLSRISSLPKTNLADTSTGVTRSRQIASLAS
SPHVSSGSSGMENLPLANKSFVEKKASAYAEAVKNLNRAREHGSQFKPATAFKGAYESLG
AEVSGGKSVNMQKIWHLVQTLVGENTTMKQSISRKMSLVIGARRHLEWGHEKYIMDTIQN
HPAQAALGGAVGNLQRVRAFLRIRLRDYGVLDFDAGDTHRQPPVDTTWQQIYFCLRTGYY
EEARTVALSSRASLQFAPMLMEWINSGGMVPVDIAAAASEECEKMLRMGDRVGRAAYDKK
KLLLYAVVSGCRWQIDHLLRDLPTLFNTIEDFLWFKLSAVRDYPAGTSTLVLNESLVPYS
LEDLQAYLNKFEPSYYTKNGKDPLVYPYVLLLSVQMLPAILYLSREAADEGYDIDAVHIS
IALADHGVLTEGGGAGQKLGVMDAYAEVSSIIRQYGSAYLHHGNLSMALEYYAQAAATVG
GGETSWTGRGNIDQQRQRSLMLKQLLTELLLRDGGIYFLLGPRGAGEEGELARFLIDFQA
RQQFLLEAARKCQEAGLDEKSIEIQKRVGAFAMALDTINKSLSEAICALSRGRLDGESRT
AGLINSGNEILVTFKYYPDFSFQERDLVLEQETVLRQLEAILSVLKLARLGHFLDALREL
AKLPFLPLDPRVPDITVDVLQNLSPRVQDCVPDLLKVALTCLDNVTDSDGSLRAMKAKIT
QFIANNMSRNWPRDLYEKVARSL
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgggtagcgaacaggacatgagtaactggactgatctgcttcactcctctactaagctt
gtcgaacaagccgctccttctgctcagttccctcctcttcagagaaacttagatcaatta
gaagcattatcaaagaaactcaaggcgaaaaccataagaactgaggctccttcgcaatct
attgccgctacaaggcttcttgcgcgtgaagggataaatgcagagcagcttgctcgagat
cttaagtcttttgaattgaagacaacatttgaggatgtgtttcctgccgaggcaacaagt
gttgaagagtatctacaacaggttcatgaaatggcaatggtatcagccattcaggaagct
cagaaggataacgtaagaagttttaatgattacatgatgaaagttttggaggaggattgg
caaaaggaaagacgtgactttcttcagagcttgagccgaatttcatcattacccaagact
aacttagctgatacaagcactggggttactcgttctcgtcaaatagcttctctggcttcc
agccctcatgtttcttctggttcatctggcatggaaaatttacctttagctaacaaatcc
tttgtggagaaaaaagcctcagcatatgctgaggctgtgaagaatctgaaccgtgcacga
gagcatggctcacagtttaaacctgcaacagccttcaagggtgcttatgaaagcttaggt
gctgaagtatcaggtggaaaatctgttaacatgcaaaagatatggcatcttgttcagaca
ttggtgggtgaaaatacaaccatgaaacagagtatttcaaggaaaatgtcgttagtgatt
ggtgcaaggcgccatcttgaatggggccatgaaaaatacatcatggatacaatacaaaat
catcctgctcaggctgctcttggtggagctgttgggaatttacaaagagttcgtgcattt
ctccggattcgattaagggattatggagttctggattttgatgctggtgatactcatagg
cagcctcctgttgataccacttggcagcagatctatttttgcttgagaactgggtactat
gaggaagcgagaactgttgccctgtcttcccgtgcttcactccaatttgctccgatgctc
atggagtggattaactctggaggtatggtgcctgtggacattgcagctgctgcttcagaa
gaatgtgagaaaatgttaagaatgggtgatcgagtgggtcgagctgcatatgacaagaaa
aagttgttgctctatgctgtagtatctggttgccgctggcagattgaccacctgctgaga
gatcttccaacccttttcaatactatagaggattttctgtggttcaaattatcagctgta
cgagattaccctgctgggacctcgactctggtcctgaatgaaagcttggtaccatacagt
ttggaggatttgcaggcatacttgaataaatttgagccatcatattacacaaaaaatggg
aaagaccctctcgtgtacccttatgtattacttttaagtgtccagatgctaccagctatc
ttatacctgtctagggaagctgcagatgaaggatatgatattgatgcagtccatatatca
attgcactagcagaccatggggttcttactgaaggtggtggagctgggcaaaaactcggg
gtaatggatgcttatgcagaggtctctagcataattaggcagtatggatctgcatattta
catcatggaaatctctcaatggcactagaatattatgcccaagctgcagccacagtaggt
ggtggagaaacatcatggactgggagaggtaatattgatcagcagaggcagagaagcttg
atgttgaagcagctcctcactgagcttctgctaagggatggtggtatttattttcttctg
ggtccaagaggtgctggagaagaaggtgaattggcacgatttttgatcgatttccaagca
agacaacaatttctacttgaagctgctcgcaagtgtcaagaggctggactagatgaaaag
tctatagaaattcagaagagagttggggcatttgccatggctttagatacaatcaacaag
tccctgtcagaagcaatttgtgcgctatctcgtggtagattggatggtgagagccgaact
gctggtctcattaattctggcaatgagattctcgtgacctttaagtattatcctgatttc
agttttcaagaaagagaccttgtcctagagcaagaaaccgtgttgaggcagcttgaggcg
atattatctgttctcaagttggcaagactgggtcattttcttgatgctttaagggagctt
gccaaacttccttttcttccattggatccacgagtgccagatatcactgttgatgttctt
cagaatttatcccctcgtgttcaggattgtgtgccagaccttttgaaggttgctttaaca
tgtttggataatgtgacagattctgatggatcacttcgtgccatgaaagcaaagattaca
cagtttattgcaaacaatatgagtcggaactggcctcgagatttgtatgagaaggttgct
cgaagtttgtga
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