KEGG   Populus trichocarpa (black cottonwood): 7485411
Entry
7485411           CDS       T01077                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04120  Ubiquitin mediated proteolysis
pop04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    7485411
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    7485411
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pop04121]
    7485411
Enzymes [BR:pop01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     7485411
Ubiquitin system [BR:pop04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    7485411
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     7485411
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_DCAF4 EIF3I WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_HPS5 WD40_RFWD3 WD40_like Beta-prop_WDR75_1st Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 7485411
NCBI-ProteinID: XP_024467502
LinkDB
Position
11:complement(1640356..1644403)
AA seq 474 aa
MALLAEKTRKMEQEEADTNMRILLDFLYCLSKQKLDDLNEIQTDLQYIEEDINYVEKKRI
QLSRENDRFSLKLGMFADDPNSKLVTQSGPNASKKKWVRAKLNALQECYLQKRRNWVRQA
CKEQERGTDTSNREGYNPGLEDFQSVLTNFTRCSQFRVVAELRQGDLFHSANIVSSIEFD
RDDELFATTGVSRRIKIFEFSKVMNEPEDVHCPVVEMSTRSKLSCVSWNKYMKNHIASSD
YEGIVTVWDVTTRQSIMEYEEHEKRAWSVDFSQNEPSMLVSGSDDCKVKIWCTKQEASVL
NIDMKANICSVKYNPGSSIHVAVGSADHHIHYYDLRNISQPLYVFRGHRKTVSYVKFLSS
DELASSSTDSTLRLWDVKENLALRTFRGHTNERNFVGLTVNSEYIACGSETNEVFVYHKA
ISKPAASHRFSTDLENGGDDARSYFTSAVCWKSDSPTMLTANSQGTIKVLVLAA
NT seq 1425 nt   +upstreamnt  +downstreamnt
atggccctccttgcagagaaaacgagaaagatggagcaagaagaagcagatacaaatatg
cgaattttacttgacttcttgtattgcctcagcaagcaaaagcttgatgatctcaatgag
attcaaacagatctccagtacattgaggaggacataaattatgtggagaagaaaagaata
cagttatccagggaaaatgacagattctcactgaaacttgggatgttcgctgatgatcca
aattctaagttagttactcaatcaggaccaaatgcatctaaaaagaaatgggtccgtgca
aagctcaatgctttgcaagaatgttacttgcaaaagcgtcgaaattgggttagacaagca
tgtaaagagcaagagaggggtacagatacttcaaatagagaaggatacaatccaggcctt
gaggatttccaatctgtgctaaccaatttcactcgatgcagtcaatttagggttgtcgct
gaacttagacaaggtgaccttttccactctgctaacatcgtgtctagtatagaatttgat
cgtgatgatgaactgtttgctactactggagtttctaggcgcattaagatttttgagttt
tccaaagtcatgaacgaaccggaagatgtgcattgtcctgttgtcgaaatgtccacgcga
tctaaactcagttgcgtgagctggaacaagtatatgaaaaatcatattgctagcagtgat
tatgaggggatagtaaccgtgtgggatgtaactactcgccagagcataatggagtatgag
gagcacgaaaagcgagcttggagtgttgatttttcacagaatgaaccttcaatgcttgta
tctgggagcgatgactgcaaggtcaaaatttggtgcacaaagcaagaggcaagtgttctc
aacattgatatgaaagcaaatatctgttctgtcaagtataatcctggatccagcattcat
gtggcggtgggatctgctgatcatcatattcactattatgacttgagaaacattagccaa
ccactttacgtgtttagggggcatcggaaaactgtttcatatgtaaaatttctatctagt
gacgaactggcttcttcatctactgacagcacattgcgcttatgggatgtgaaggaaaat
ctagcactgcgtacatttagaggccatacgaatgagagaaactttgtgggtcttacggtg
aatagtgaatacattgcttgcggcagcgaaacgaatgaagtgtttgtgtatcacaaggcc
atctctaaacctgcagcttcgcatagatttagtacagatttggagaatggtggcgatgat
gctagatcatacttcactagtgctgtgtgttggaagagtgatagccctacaatgctaact
gcaaatagtcaaggaaccattaaagtgcttgttcttgctgcttga

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