Populus trichocarpa (black cottonwood): 7485423
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Entry
7485423 CDS
T01077
Name
(RefSeq) guanine nucleotide exchange factor SPIKE 1 isoform X1
KO
K21852
dedicator of cytokinesis protein 6/7/8
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7485423
Membrane trafficking [BR:
pop04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
7485423
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHR-2_Lobe_A
DOCK-C2
DHR-2_Lobe_C
DHR-2_Lobe_B
Motif
Other DBs
NCBI-GeneID:
7485423
NCBI-ProteinID:
XP_024467269
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All DBs
Position
11:1778752..1805140
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AA seq
1852 aa
AA seq
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MDNSNSNGSSGGQRFRKIPRHSQSLSHLKLDPLVDENLEQWPHLNELVQCYRTDWVKDEN
KYGHYESISPVSFQNQIFEGPDTDLETEMHLANSRRNKAEETTDDDIPSTSGRQFVEAAF
PDSSNSVVSKHFGESPLPAYEPAFDWDNERSMIFGQRIPETPLPQYDSGLKISVKVLSLS
FQAGLAEPFYGTICIYNKERREKLSEDFYFSVVPTDTQDAKISHDPRGIFYLDAPSSSIC
LLIQLEKPATEEGGVTASVYSRKEPVHLSEREKQKLQVWSRIMPYKESFAWTIVPLFDNS
IAATSGGAASPSSPLAPSVSGSSSHDGVFEPVAKITLDGKLGYSSGSSVVVEISNLNKVK
ESYTEDSLQDPKRKVHKPVKGVLRLEIEKHQTAHAELENLSETGSITNDSIDLGDRVADS
AFTKSPSNGFDDPQTSGSKWNIFDGKETSGNISNARENPDFTADDFQAFDFRTTTRNEPF
LQLFHCLYVYPLTVSLSRKRNLFIRVELRKDDVDVRRQPLEAMHPREPGTSLQKWAHTQV
AAGTRVACYHDEIKLSLPAIWTPSHHLLFTFFHVDLQTKLEAPKPVVIGYAVLPLSTHAQ
LRSEISLPIMRELVPHYLQEMGKERLDYLEDGKNVFRLRLRLCSSLYPINERIRDFFIEY
DRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPILNMLLHLIGSGGETLQVAAFRAM
VNILTRVQQESVDDTERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRV
GPVYDDVLAMAWFFLELIVKSMALEQARLFYHSLPLGEDVPPMQLKEGVFRCIMQLYDCL
LTEVHERCKKGLSLAKRLNSSLAFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDC
KLTFLQIICDHDLFVEMPGRDPSDRNYLASVLIQELFLTWDHDELSQRSKAARILVVLLC
KHEFDARYQKPEDKLYIAQLYFPLVGQILDEMPVFYNLNAVEKREVLIVILQIMRNLDDT
SLVKAWQQSIARTRLFFKLMEECLVLFEHRKPADGILMGSSSRSPVGDGPASPKYSDRLS
PAINNYLSEASRQEVRPQGKTDNGYLWQRVNSQLSSPSQPYSLREALAQAQSSRIGASAQ
ALRESLHPILRQKLELWEENLSAAVSLQVLEITEKFSMMAASHSIATDYGKLDCLTAIFT
SFFSRNQPLSFWKALFPVFNNVFDLHGATLMARENDRFLKQVAFHLLRLAVFRNESVKKR
AVIGLQILVRSAFYYFMQTARLRVMLTITLSELMSDVQVTQMKSDGMLEESGEAKRLRKS
LEEVADELKTPDLLRECGVPESALVAVPKKLADNRWSWSEVKYLSDCLILALDASLEHAL
LGSVMTVDRYAAAESFYKLAMAFAPVPDLHIMWLLHLCDAHQEMQSWAEAAQCAVAVAGV
VMQALVARNDGVWSKDHVISLRKICPMVSSEITAEASAAEVEGYGSSKLTVDSAVKYLQL
ANRLFSQAELFHFCANILELVIPVHKSRRAYGQLAKCHTMLTDIYESILEQESSPIPFTD
ATYYRVGFYGERFGKLDRKEYVYREPRDVRLGDIMEKLSHIYESRMDDNHTLHIIPDSRQ
VKADELQPGVCYLQITAVDPVMEDEDLGSRRERIFSLSTGTVRARVFDRFLFDTPFTKNG
KTQGGLEDQWKRRTVLQTEGSFPALVNRLLVMKSESLEFSPVENAIGMIETRTAALRNEL
EEPRSSEGDQLPRLQSLQRILQGSVAVQVNSGVLSVCTAFLSGEPATRLRSQELQQLIAA
LLEFMAVCKRAIRVHFRLIGEEDQDFHTQLVNGFQSLTAELSHYIPAILAEL
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
atggataatagtaatagtaacggcagcagcggggggcagcggttccggaaaatacctcgg
cattctcagtccctttctcatctcaagttggacccgctggtagatgaaaatttggagcag
tggccacatcttaatgaacttgttcaatgttatagaactgattgggtgaaggatgaaaac
aagtatggtcattatgaaagtatctctccagtatcttttcaaaaccagatttttgaaggt
ccggatactgatctcgagacagaaatgcatcttgccaattcaagacgaaacaaggctgaa
gagaccaccgatgatgacatcccaagtacttcaggaaggcaatttgtggaggccgccttc
cccgactcatcaaattctgttgtttcaaagcattttggtgaatctcctctccctgcatat
gaaccagcttttgattgggataatgagaggtcgatgatatttggccaaaggattcctgaa
actccattgccacagtatgacagtggattgaagatctctgtgaaagtactgtccctatca
tttcaagcaggattagctgagccattttatggtacaatttgcatatataataaggagaga
agagaaaagttgtccgaggatttttatttttctgtggtgccaacagacacacaagatgca
aaaatttctcatgatcctcgtggaattttctatttagatgctccttcatcatcaatatgt
ttgctaatccaactagagaagcctgccacagaagaaggcggggtcactgcctctgtttat
tcacgtaaagaacctgtgcacttgagcgagagagagaagcagaaactgcaggtctggtct
cgtattatgccttacaaagaatcctttgcctggactattgttccattatttgataacagt
attgctgcgacttccgggggggctgcttctccaagcagccctcttgctccaagtgtatct
ggctcaagctcccatgacggtgttttcgagcctgttgcaaagatcactctggatgggaag
ttgggttattcaagtggaagctctgttgtggttgaaatatcaaatttaaataaagttaag
gaaagctacactgaggactcacttcaggatcctaaacgcaaagttcataaacctgtcaag
ggtgttctccgactagaaattgaaaagcatcagacagcccatgctgagttggaaaattta
tcagaaactggcagtataaccaatgattccattgatctgggggatcgtgttgctgattct
gcatttacaaaatcccctagcaatggctttgatgatcctcaaactagtggttcgaagtgg
aatatctttgatgggaaagaaacatctggaaatatatcaaatgctcgtgaaaatcctgat
ttcactgctgatgattttcaagcttttgatttccgcacgaccacgaggaacgagcctttc
ttgcagcttttccattgcctgtatgtttacccattaactgtcagtttgagtcggaagagg
aatttgttcattcgggttgaactaaggaaggatgacgtggatgttcgtagacagccttta
gaggcaatgcatcccagggagccaggaacatcgctccaaaagtgggctcacacacaagta
gctgctgggactagagtggcttgctatcatgatgaaatcaaactttctctgccagcgatt
tggacaccatcccatcacctcttgttcactttcttccatgttgatcttcaaaccaaactg
gaagctccaaaaccagtggttatcggatatgcagtgcttccattatccacacatgcacag
ttgagatctgaaatttctttgccaataatgagagagctggttccacattatctccaggaa
atgggaaaggagaggctggattatttggaagatggaaaaaatgtcttcagattgcgcttg
agactatgctcatctctgtatcccattaatgagcgcattagagatttttttattgaatat
gataggcacactcttcgtactagtccaccttggggatctgaacttcttgaggccattaat
agtctgaagaacgttgattccactgctttgcttcagtttctccacccaattttgaatatg
cttctccatcttattggcagtggtggagaaactctccaggttgcagccttcagggccatg
gttaatatcctaactagggtgcagcaagagtcagttgatgatactgaacggaatcgtttt
ctggttaactatgttgattatgcttttgatgactttggtggtcgtcaaccacctgtttat
cctggtttgtccactgtgtgggggagtctggctcgtagcaaggctaaaggctatcgtgtt
ggaccagtatatgatgatgtattggcaatggcatggtttttccttgagcttattgtcaag
tcaatggcattggagcaagctcgtcttttctatcatagtcttccattgggtgaagatgtt
ccaccgatgcaattgaaagaaggtgtgttcagatgcatcatgcagttatatgattgcctt
cttacagaggtgcatgagcgttgtaagaagggtttaagcttggcaaaacgtttgaatagc
agtttggccttcttctgctatgatcttttgtcaatcattgaacctcgtcaagtttttgaa
ttggtgtccttgtacctggacaagttttctggggtatgccaatcagttcttcatgactgc
aagcttacctttttgcaaatcatatgtgatcatgatctttttgtggagatgccggggagg
gacccttcagatagaaactaccttgcatctgttttaatacaagagcttttccttacttgg
gatcatgacgagctatctcaacggtcaaaggcagccagaatcttagtagtactgctttgc
aagcatgaatttgatgctcgataccaaaagcctgaagataaactatatatcgcacagcta
tattttccacttgttggccagatcctggatgagatgcctgtcttctacaacctgaatgct
gttgaaaagcgtgaagttttaattgttattttgcaaatcatgcgcaatttggatgataca
tcgcttgtcaaggcgtggcagcaaagcattgctcggactagattatttttcaaactcatg
gaggaatgccttgttctttttgagcacagaaaacctgctgatggcattcttatgggatct
agttctcgcagtcctgttggggatggacctgcttctcccaagtactccgataggctctct
ccagcaatcaacaattatctgtctgaggcatcacggcaagaagtcaggcctcagggtaaa
actgataatggatatttgtggcagagagtgaattcccaattaagctcccccagccagcca
tattccttgagagaagcacttgctcaggcacaatcttccaggattggagcttcagcccaa
gcacttagagaatccttgcatccaatattgagacaaaaactggagctttgggaagaaaac
ttgagtgctgctgtgagtcttcaggttctggaaataactgagaagttttctatgatggca
gcttcccatagcattgctactgattatgggaaacttgattgcctcacagccatatttacg
agcttcttctctcgaaatcaaccattgtctttctggaaagctctatttcctgtctttaac
aatgtgtttgatcttcatggggcaacattaatggccagggagaacgatcgtttcttaaag
caggttgctttccatcttcttcggcttgcagtttttagaaacgaaagtgtcaagaaaaga
gctgttattggcctccagattcttgtcaggagcgctttctattacttcatgcaaacagca
aggttgagggtcatgctgactatcacactgtcagagctgatgtctgatgtgcaagtgact
cagatgaagtctgatggaatgctagaggagagtggtgaagcaaagcgtcttcgcaagtct
ttggaggaggtggcagatgaattgaagactcctgacctactacgggaatgtggagttcct
gaaagtgctctggtggcagttccaaaaaagttggcagacaataggtggtcctggagtgag
gtgaaatatctctcagactgccttatcctggcccttgatgctagccttgaacatgcactc
ttgggttctgtaatgactgtggatagatatgcggctgcagagagcttctataaactagca
atggcatttgctcctgttcctgatcttcacataatgtggttactgcatttatgcgatgcg
catcaggaaatgcagtcttgggctgaagctgcacagtgtgctgtggctgttgctggtgtt
gtaatgcaggctcttgtggctaggaatgatggtgtgtggagcaaagatcacgtgatctct
ctacgtaaaatttgcccaatggtcagcagtgagatcactgctgaggcatctgcagctgag
gtagaggggtatggttcttcaaagctcacagtggactctgctgtaaaatatctacagctt
gctaataggcttttctctcaagctgagctttttcatttctgtgcaaacattctggagctt
gtaataccagttcataaaagtaggagggcatatgggcagctggctaaatgtcacaccatg
cttactgatatctatgaatcaattctggagcaggaatcaagcccaattccgttcactgat
gccacatactatagggtgggattctatggtgaaaggtttgggaaactagataggaaggaa
tatgtataccgagagccccgtgatgtacggctaggtgacataatggagaaacttagtcat
atttatgagtctaggatggacgacaatcacactttgcatattattccagattctaggcaa
gtaaaggctgacgagctgcagcccggagtctgctacctgcagataactgctgttgatccg
gtcatggaagatgaagatttaggaagcagaagggaaaggatcttttctctttccactgga
actgtccgggcacgtgtctttgaccgcttcttgtttgacactccatttacaaaaaatggt
aaaacccaaggtggattggaagaccaatggaagaggaggacagttcttcagactgaaggc
tcattccctgctctggtgaacaggcttttggtaatgaaatctgaatctcttgagttctca
ccagtcgagaatgcaattggaatgattgaaactcgaacagctgccttacgaaacgagctt
gaggagccccgcagctctgaaggcgatcagcttccacgtctccaaagtttgcagagaatt
ctccaaggcagtgttgccgttcaagtaaacagcggcgttttgagtgtctgcacggccttc
ctgtcgggtgagcctgctacaaggttgcgttctcaagaactgcagcaactcattgctgcc
ttgcttgaattcatggctgtttgcaagcgcgccattcgtgtacattttagattgattgga
gaggaagatcaagatttccacacgcagcttgtgaacggatttcaatcgctcactgcagag
ttatctcattacatcccagccattcttgcagaactatga
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