Populus trichocarpa (black cottonwood): 7485448
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Entry
7485448 CDS
T01077
Name
(RefSeq) protein RTF1 homolog
KO
K15178
RNA polymerase-associated protein RTF1
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pop03021
]
7485448
Transcription machinery [BR:
pop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
7485448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plus-3
Motif
Other DBs
NCBI-GeneID:
7485448
NCBI-ProteinID:
XP_002316628
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All DBs
Position
11:complement(3803761..3806567)
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AA seq
666 aa
AA seq
DB search
MTMADLENLLLEAAGRTGKSGRNRNSLPPSRRRKQEGSYSDGGSDSRDDGSDDDRGYASR
KPSGSQVPLKKRLETNERDDEGGSQEEGDYDDGGSDREGESSDGSDIGDDLYKDENDRQK
LAQMSELDRELILADRADKKGDKHLTEKIRSKRDNDKPTRSRKETPPLPSSRGVRSSARS
ADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRGFAQVKKNNFTSARLSSSS
SESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIKEITIRRTKLAKWFMEPWF
EELIIGCFVRVGIGRSKTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSA
ARWQMAMVSDSAPTEEEYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQ
MLQEKKSASSRPLNVAAEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKDAK
ALRLAEMNRKNRVENFRNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGDDA
VAASNSEANDTAALADSNHVVAGAISESGVAATAAALDAAADAGKLVDTSAPVDQGTESN
TMHNFELEISLIALQKFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTVGDYK
RRRGLL
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgacgatggcggatttagaaaatttgctgcttgaggcagcgggaaggactgggaaatca
ggaagaaacaggaattcattacctccatcgaggaggcgaaaacaggagggttcatattcg
gatggtggaagtgattctagggatgatggttcggatgatgatcgtgggtatgcaagtagg
aagccatctggttctcaagtgcctttgaagaagagactggaaactaatgagagggatgat
gaggggggtagtcaggaagaaggtgattatgatgatggtggttcggatcgtgagggtgag
agtagtgatggatcggatattggtgatgatctttacaaagacgagaatgatcggcagaag
cttgctcagatgagtgaacttgacagggagttgatattggcagaccgggcagacaagaaa
ggggataaacatttgactgagaaaatcagatcgaaaagggacaatgataagccaacccga
tctagaaaagagactccacctcttccatcgtcgcgtggagtgcgttcgtcagctaggtca
gctgacagggctgctgctaaagatgatgcattgaatgaattgagagctaaacgattaaaa
cagcaggacccggaggctcatcgcaagttgagggatgcatctagaggatctgctggcagc
aggggctttgcacaagtcaagaagaataatttcacttcagcacgtctgagtagctctagc
agtgagagtgagagtggaagtaggtctcacagtgaggatgaagggtcaacaggtgatggt
ggaatggcagatagtgatgaggatggggatcctgggtcccgggggccaacttatgaagat
ataaaagaaattacaattcggagaacaaaacttgcaaaatggtttatggagccttggttt
gaagaattgattattggttgttttgtgagggtagggattggtagatcgaagactgggcct
gtgtacaggctctgcatggtccggaatgttgatgctgcagaacctgacaaaccatacaaa
ctggagaataagtcaacttataagtatttgaatgttacttggggtgctgatagctctgct
gccaggtggcagatggctatggtgtcagattctgcaccaactgaggaagagtataaacag
tgggttagagaggcagagcgtggtggtggccgtttaccaagcaaacaagatatcttggaa
aagaaggaggccatacgtaagtcaaacacttttgtgtactcagcagccactgtgaagcag
atgctgcaggagaaaaaatctgcatcatcgagaccattaaatgttgctgctgagaaggac
aggttgaggagggagttggaaattgcacaaagtaggcatgatgaggcagaggttgagagg
atagaggcaaggattctggaactggaggcatctcggcaggctaaggtgaaagatgctaag
gctcttaggttggcagaaatgaatagaaagaacagggttgagaacttcagaaatgcatca
gaattgaagcctataaatacaggtctaaaagccggagaagctgggtacgatccattttca
aggagatggacaaggtcaaggaattattatgtttcaaaccctgctggaggagatgatgct
gttgcagcatcgaatagtgaggcaaatgacacagcggcacttgcagatagtaatcatgtg
gtagcaggggcaatttcggagtctggtgttgctgctacagcagctgccttggatgcggca
gctgatgctgggaagttggttgataccagtgctcctgtggatcaaggcactgagtcaaat
acaatgcataactttgagcttgaaatctcactgattgcactgcagaagtttcgtggacct
cagggtgcccatgcagggttcatggctaggaaacagaggatagaagcaaatgttggatgc
caagtccgtgagaatgatgggagaagacatgctttgaccttgactgttggtgactacaag
agaagacgagggcttctctga
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