Populus trichocarpa (black cottonwood): 7485524
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Entry
7485524 CDS
T01077
Name
(RefSeq) YTH domain-containing protein ECT3 isoform X1
KO
K20102
YTH domain-containing family protein
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7485524
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
7485524
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Motif
Other DBs
NCBI-GeneID:
7485524
NCBI-ProteinID:
XP_002309031
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Position
6:complement(5946546..5951982)
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AA seq
640 aa
AA seq
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MDDHPSSPDYLSPPPGESLTNRDNSLMEQPLSPKDERIVSVNPSPEAAVIKRPQLSATVA
PDLTIVPPPPPPPQLNVYDYSSHDQAMAAYAGYGNNTGIWDGYSQHLNAADGMHLSPIIY
NDNQSLMYHSGYGFNPDMGHGQYSPMATPLTPIMLDGQLYSPQQIPFSPVYHPDVPSPGP
LGSSEQISFESNSGNSFFGPGSGYLVHYGSFGGGNMSGAPGSDSLTSPSAYPQPMGILGP
YEHQVAQGSQQRSLHGYGYGYGYTSSSPVGHYQHGGSFQSSSFAGGSISYAGANDRTRVG
LDKGRRRDRDQGSIYSSNDPFGFDRNRGPRASKLKGKNATEQLSSSGNGKGNSASSGIQL
DLYNQLDFVTDYKDAKFFIIKSFSEDNVHKSIKYSVWASTPHGNKKIDAAYREAKEKEGN
CPVFLLFSVNASGQFCGVAEMVGPVDFEKDAEYWQQDRWNGQFPVQWHIVKDVPNSRFRH
ILLENNDNKPATHSRDSQEVKLEQGIEMLKIFKDHDAPTSILDDFDFYDQCERALKERKA
KQQPSLKVGGAGLLTDDTINQMSDFLAQSLKLDDVNKEPAAREEVASLGPGMEVLPANNC
NTAVELANNSNIVVSKAEDSNNHNLSPALKSKEGSGEYQD
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggacgaccacccatcctctccggattatctttcccctccccctggagaatcactcact
aatcgcgataattctttgatggagcagccactttcgcccaaagatgaaaggattgtttcg
gtgaatccttccccggaagcagccgtcataaaacgcccacaattatctgctactgttgct
ccagatcttaccattgttccaccacctcctccaccaccgcaactcaatgtttatgattat
tcctcacatgaccaagcaatggcagcttatgctggttatggcaataacactggtatttgg
gatgggtattctcaacatcttaatgcggctgatggaatgcatttatctccgattatatac
aatgataatcaatctcttatgtatcattccggatatggctttaatcctgatatgggacac
gggcaatattctcctatggctacgcctctaactcctataatgctagacggccagttatac
tctccacaacagatcccattctccccagtttaccatccagatgtgccctcaccaggtcct
ctaggctcatctgagcaaatctcatttgaaagcaatagtggcaactccttttttggacca
ggatcaggttacctggtacattatggatcatttggtgggggaaacatgtccggggctcct
ggctctgattccttaacatctccatctgcttatcctcaaccaatgggcatactcgggcca
tatgagcaccaagttgcacagggttctcagcaaagatcgttgcatggatatggatatgga
tatggatacacatcatcttcccctgttggacattaccagcatggtggctcttttcagagc
tctagttttgccggtggttcaatttcttatgcaggggctaatgaccggacacgagttgga
cttgataaaggcaggaggagagacagagaccagggctccatttattcttctaatgatcca
tttggttttgaccgtaatcgaggaccaagggcttcaaagcttaagggaaagaatgccact
gaacagctttcctcctctggtaatggcaaaggcaattcagctagctctgggattcagctt
gatttatataaccagctagattttgtcactgattacaaggatgccaagttctttataatc
aagtctttcagtgaagataatgttcataaaagtattaaatatagtgtttgggcaagcact
ccacacgggaacaaaaaaattgatgctgcttatcgtgaagcaaaggagaaagaaggaaac
tgtccagtctttcttttgttttcggtcaatgctagtggacagttttgtggagtagcggaa
atggttggacccgtagactttgagaaggatgctgaatattggcagcaagatagatggaat
ggccagtttccagtccagtggcatatcgttaaagatgttcccaatagtcgtttccggcac
atactacttgaaaacaatgataataagcctgctactcatagtcgagattctcaagaggtg
aaactagaacagggtattgagatgttgaaaatcttcaaggatcatgatgcacctacatct
atcctggatgattttgacttttatgatcaatgtgagagagctttgaaggaaaggaaggcc
aaacagcaacctagtttgaaagtaggtggtgcaggtttgctcactgatgataccataaat
caaatgtctgattttcttgcgcaatctctcaagttggatgatgttaataaagaaccagca
gccagagaagaggttgctagcttaggacctggtatggaggtcttaccggctaataattgc
aatactgccgtggaacttgctaacaattccaacatcgtggtttcaaaagctgaagattcc
aacaaccataacttgtctcctgccttgaagtcaaaagagggtagcggcgagtaccaggat
taa
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