Populus trichocarpa (black cottonwood): 7485598
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Entry
7485598 CDS
T01077
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
7485598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7485598
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
7485598
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
7485598
NCBI-ProteinID:
XP_002316664
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Position
11:complement(3288323..3294578)
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AA seq
585 aa
AA seq
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MDSNPKMRKEFLDSTRSSLFPDEVLERVLSLLKSHKDRSAVSLVCKDWYNAESWSRTHVF
IGNCYSVSPEIVARRFPRIKSVTLKGKPRFSDFNLVPENWGADVHPWFVVFAAKYPFLEE
LRLKRMAVSDESLEFLALNFPNFKVLSLLSCDGFSTDGLAAIATHCKNLTQLDIQENGID
DKSGNWLSCFPENFTSLEVLNFANLNTDVNFDALERLVSRCKSLKVLKANKSISLEQLQR
LLVCAPQLTELGTGSFMPELTARQYAELGSSFNQLKNLNTLSGLWEATAPYLPVLYPACT
NLTFLNLSYAFLQSIELASLLCQCPRLRRLWVLDTVGDKGLEAVGSNCPLLEELRVFPAD
PFDEEVIHGVTEAGFLAVSYGCRRLHYVLYFCRQMTNAAVATIVQNCPDFTHFRLCIMNP
GQPDYLTNEPMDEAFGAVVRTCTKLQRLSVSGLLTDLTFEYIGQYAKNLETLSVAFAGSS
DRGMQCMLEGCPKLRKLEIRDCPFGNAALLSGLEKYESMRSLWMSACNVTMNGCRVLARE
MPRLNVEVMKEDGSDDSQADKVYVYRSVVGPRRDAPPCVLTLSGL
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggattcgaatccaaagatgagaaaggaatttcttgactcaacaagatcatctctattt
ccagatgaagtactggaacgagttctttcactcttgaaatcacacaaagatcgtagcgca
gtctctttagtatgcaaggattggtacaacgcagaaagctggtcaagaactcatgttttt
ataggaaactgttattcagtctctcctgaaattgtcgcacgtagattcccaagaattaag
agtgtgactctcaaagggaagccgagattttctgattttaatctggtccctgaaaactgg
ggagctgatgttcatccttggtttgtagtttttgctgcaaagtatccctttttggaagag
ttaaggcttaagagaatggctgttagcgatgaaagtttggagtttttggctcttaatttt
cctaatttcaaggttctttctcttttgagctgtgatgggtttagtactgatgggcttgct
gctattgccactcattgcaagaatttgactcagcttgatatacaagagaatggcattgat
gacaagagtggcaactggttaagctgcttccctgaaaacttcacatcattggaagtacta
aactttgccaacttgaacactgatgtcaattttgatgcacttgagaggcttgtaagtcgg
tgcaaatcactgaaggttctgaaggccaacaaaagtatttccttggaacaactacaaagg
ctgctggtttgtgctccacagttaacagagcttggtactggttcattcatgccagagctt
acagctcgccagtacgctgagcttggaagttcatttaaccagctgaagaatttaaatacc
ctttctggtttatgggaggcaacagcaccatacttaccagttctctatcctgcctgtaca
aacttgactttcttaaacttgagctatgcctttctgcaaagtattgaacttgcgagtctt
ctttgtcaatgtccacgtcttcgacgcctctgggtcttggacactgtgggggacaaaggt
ttagaggctgttggatctaactgtccattgcttgaggagctccgtgtcttccctgcagat
ccctttgatgaggaagttatccatggggtgactgaagctgggtttcttgctgtgtcttac
ggatgtcggagactccactatgttctctacttttgcaggcagatgactaatgctgcagta
gccaccattgtgcagaactgcccagatttcacccacttccgtctctgcataatgaatcca
ggccaaccagattacttgacaaacgaacccatggatgaagcttttggggcggtagtgagg
acatgcactaaactacagaggctttctgtttcaggtctcttgactgacctgacattcgag
tatattgggcagtatgccaaaaatctggaaactctgtcagtggcttttgctggcagtagt
gatagggggatgcagtgcatgctggaaggttgtccaaagttgaggaaacttgagataagg
gactgcccatttggaaatgcagcacttctttcaggtttggagaaatacgagtcaatgagg
tcactttggatgtcagcctgcaatgtgacaatgaatggctgtcgggtattggcaagggag
atgcccagattgaatgtagaggtaatgaaagaggatgggagtgatgattctcaggctgat
aaagtttatgtttatcgttctgttgtgggaccaagaagagatgccccgccttgtgtactg
actctctcaggtttataa
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