Populus trichocarpa (black cottonwood): 7485605
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Entry
7485605 CDS
T01077
Name
(RefSeq) vacuolar protein sorting-associated protein 35B isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
7485605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7485605
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
7485605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
7485605
NCBI-ProteinID:
XP_002307736
UniProt:
B9H504
LinkDB
All DBs
Position
5:complement(23865187..23872040)
Genome browser
AA seq
790 aa
AA seq
DB search
MILAGIEDEDKWLAEGIAGIQHNAFYMHRALDANNLRDALKCSALMLSELRTSKLSPHKY
YDLYMRAFDELRKLEMFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDALKDLVEMCRGVQNPIRGLFLRSYLAQVSRDKLPNLGSEYEGGEDTAMDAVEFVL
QNFTEMNKLWVRMQHQGPVRIREKLEKERNELRDLVGKNLHVLSQIEGVNLEIYRDTVLP
RVLEQIVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLME
RLSNYAASSPDVLPEFLQVEAFAKLSSAIGKVIEAQVDMPIVGAVTLYVSLLTFTLHVHP
ERLDYVDQVLGACVKLLFGKPKLKEGRATKQIVALLSAPLEKYNDIVTALTLSNYPCVMD
CLHDETNKVMAMVIIQSIMKNNTCISTADEIEVLFELLKGLIKGLDGTAADELDEEDFNE
EQNSVARLIHMLYNDDSEEMLKIICTVRKHIMAGGPTRLPFTVPPLIFSALRLVRKLQAQ
DGNVVGEEEPATPKKIFQLLDETIEALSSVPSPELALRLYLQCAQAANDCDLEPVAYEFF
TQAFILYEEEVVDSKAQVTAMHLIIGALQRMNVLGVENRDTLTHKATGYSAKLLKRPDQC
RAVYACSHLFWVDEKDGIKDGERVLLCLKRALRIANAAQQMANAVSGTSGPVTLFVEILN
KYLYFFEKGNPQVTSAAIQGLVELIANEMQSDSTTPDPASDAFFASTIRYIQFQKQKGGV
VGEKFGPIKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatcttagccggaatagaagacgaagacaaatggctagcagaaggaatcgccggcatt
caacacaacgccttttacatgcatcgcgctttggacgccaacaatctccgagacgctctc
aaatgctcagctctaatgctatcagagcttcgaacttctaaactctctccgcacaaatac
tacgatctctatatgagagcgtttgatgaattgaggaaactagagatgtttttcaaagac
gagagtaggcatggcgtttcgattgttgatttatacgaactcgtgcagcatgctggcaat
atattgcctagactgtatctactgtgtacggtaggatcagtgtatatcaaatcgaaggaa
gctccggctaaggatgcgcttaaggatcttgtagagatgtgtcgcggtgttcaaaatccg
attcgaggattgtttttgagaagttatcttgctcaagttagcagagataaattacccaac
cttgggtccgagtatgaaggaggtgaggacacagcaatggatgcagtagaatttgtgctg
caaaatttcaccgagatgaataaactttgggttcggatgcagcatcaggggcctgttagg
attagagagaagctggaaaaggaaagaaatgagcttcgtgatcttgtagggaagaatctc
catgttcttagtcagattgagggcgtgaaccttgaaatttacagagacactgttcttccc
agagttttagagcagattgtcaactgtaaagatgagctggcacagtattatttaatggac
tgcataattcaagtctttccagatgagtaccacttgcagacccttgagacattgttgggg
gcctgcccccagcttcagccaacagttgacattaagacagtgctatcacggttaatggaa
agattgtccaattatgctgcttcaagtccggatgttttacccgagttcctgcaagtagaa
gcttttgctaaattgagcagtgctattggaaaggtgattgaagcacaggttgacatgcct
attgttggagccgttactttgtatgtgtctctcctcacatttacactacacgttcatcct
gaacgccttgattatgtggatcaagtactgggggcatgtgttaagctcctctttggcaag
ccaaagcttaaagagggcagagcaacaaaacaaattgttgcacttctgagtgctccatta
gaaaagtacaatgacattgtcactgccttaacgctgtctaattacccttgtgtcatggac
tgtcttcatgatgaaacaaataaagtcatggcaatggttattattcagagcattatgaaa
aataatacttgcatttctactgctgacgagattgaggtgttgtttgaattattaaaagga
ctgataaagggtttggatgggactgctgcagatgagctcgacgaggaggatttcaatgaa
gaacaaaattctgtcgctcgccttatacatatgctttataatgatgattcggaggaaatg
ttgaagattatctgcactgtgaggaagcatataatggctggagggccaacacgattacct
tttacagttcctcctctcatattctccgcactcaggttggtgagaaagttgcaagctcag
gatggaaatgtagtaggagaagaagagcctgcaacacctaagaaaatttttcagctcctg
gatgagacaattgaggctctttcatcagttccctcacctgagctggcattaaggttgtac
ttgcaatgtgctcaggctgccaatgactgtgatcttgagccagttgcttatgaatttttt
acacaggcattcatattatatgaagaagaagttgtggactcaaaggcccaggtgactgca
atgcatctaataattggggctctccagaggatgaatgtattgggtgttgagaacagggac
actctaacacacaaggccacaggatattctgcaaagcttttgaagagacctgatcagtgc
agagcagtgtacgcttgctcacatctattttgggttgatgaaaaggatggcatcaaggat
ggggaaagggtcctcctttgcctcaagcgtgccttgagaattgcaaatgcagctcagcag
atggccaatgcagtaagtggtacaagtgggccggtcacattgtttgttgaaatactgaac
aagtacctgtacttttttgagaaaggaaacccacaggttaccagtgctgcaatccagggg
ctggtagaattaatcgctaatgagatgcagagtgactccaccacaccagatccagcatca
gatgccttctttgccagcacaatccggtacattcagttccagaaacaaaagggaggtgtc
gtgggtgagaaatttgggcctatcaaggtgtaa
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