Populus trichocarpa (black cottonwood): 7485685
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Entry
7485685 CDS
T01077
Name
(RefSeq) uncharacterized protein LOC7485685 isoform X2
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop03013
Nucleocytoplasmic transport
pop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
7485685
03015 mRNA surveillance pathway
7485685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pop03019
]
7485685
03041 Spliceosome [BR:
pop03041
]
7485685
Messenger RNA biogenesis [BR:
pop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
7485685
Spliceosome [BR:
pop03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
7485685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
OrfB_IS605
Motif
Other DBs
NCBI-GeneID:
7485685
NCBI-ProteinID:
XP_002299851
UniProt:
B9GJ86
LinkDB
All DBs
Position
1:26184840..26190237
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AA seq
826 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELDHLVNTKKVKMDVIKPWIANRVTELL
GFEDEVLINFIYGLLDGKEVNGKEVQISLTGFMEKNTGKFMKELWTLLLSAGKNESGVPQ
QFLDAKEEETRKKQAEVDRIANEIQKKKEKEEESRELERERSKKMDDEVEKKANNAMEPA
SKHMLPKGSSGRAEDEKETVTRNGARGRKGGSTSRISRSVSNSRSHSGHNSRSVSRSPEA
RGRRSMSSDRVYRSPRRRSITPPRRRSSYSKHRSRSPFRRRSPSPIRRRLRSPFRRRSPS
PSHDRSPSPVRRRRSPSPVRRRRSPSPIRRRRSPLPIRRRRSPSLVRRKSPSFVRRRSPS
PIRRKSSPSMRRKSPSPVRQRYQRSPSTPHHMSPPMRHKSSVISRKRSPSPLHRSPLPHG
SSSPSPVQHRSPSSGRSPKELKRSPMQSLGERVRSQQTLLPVPQRSSSSFRSQQRDQKDQ
KDLHTRLPPLSPSPERSPPVGRKRSASEDKRSPSPYESPARQRRERITHDGSLSPLQQRV
RKPLKDSPESGKDHEETGYTREGGDYNSTSSHKRPLYPSNMDKQRDPPVKFHCKDEQALE
RLASHQTTDSRNYPDNMDSRKKDQDIKIGKSSGRGGDQETLEAQKSPSLYKNEKDRSRLN
NVKDSDKRRKSETVPVTAEKVHHSNGSGALDSGSEESGKHRGEKREKSKHKRSHRHEVAL
DDDGSHGSEIEERKETKRRRKEEKKLRKEEKRRRHEERRRKRAERHAEKLKLKGRDDASS
SDDEHVGRRESHPSDDEETESDQRRLEIELRKKALESLKAKKGTSH
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgggtttttcaggggcacttctgctgatcaggacactcggttctccaacaag
caagcgaagctattgaaatcacagaagttcgctcctgaactggaccatctggttaacacc
aagaaagtgaagatggatgttattaaaccatggattgctaatagagtgacggagcttcta
gggtttgaagatgaagtccttatcaactttatttacggtttgctcgatggaaaggaagtg
aatgggaaggaagttcaaatatcgctgacaggattcatggagaaaaacactgggaagttt
atgaaagagctttggacacttcttcttagtgcggggaagaatgaaagcggcgttcctcaa
cagtttttggatgccaaagaagaagaaacacggaagaagcaggcagaggtggataggata
gcaaatgaaatccaaaagaagaaagagaaagaggaggagagtagagaacttgagagggaa
agatcaaagaagatggacgatgaggttgaaaagaaagccaataatgctatggagccagct
tcaaagcatatgctgcctaagggttcgagtggccgtgctgaggatgaaaaagaaactgtc
acaaggaatggtgcaagaggaaggaaaggaggttcaacttctaggatcagcaggtcggtt
tcaaattcgagaagtcattcggggcataactcaagaagtgtgtctagatcacctgaagct
cgaggacgacgctccatgtcttctgatagggtgtatcgctcaccaagaaggcgctcaatt
acacctcctcggaggagatcatcatactctaagcataggtctagatccccttttagacgc
aggtcaccatcccctatacgacgtagattgcgttctccctttcgacgtaggtcaccttca
ccctcacatgataggtcaccatcacctgttcgacgtcgtaggtcaccatcacctgttcga
cgccgcagatctccttcgcctattcgacgccgcagatctcctttgcctattaggcgccgc
aggtcaccttcccttgtgcgccgcaaatcaccttcatttgtgcgccgcagatcaccttca
cctatacgtcgcaaatcatccccttccatgcgacgcaaatcaccatctcctgtacgtcaa
aggtatcaaaggtctccgtctactcctcaccacatgtctcctcccatgcgacacaagtca
tctgtcatttcacgcaagagatctccatctcctcttcatcgctctcctttgcctcacgga
tcaagctctccatctcctgtacaacataggtctccttcttcagggagatctccaaaggaa
ctcaagagatcacccatgcagtcccttggagaaagagtcagatcacaacaaacattgttg
cctgttccgcaacgctcctccagttcttttaggtcacaacaaagagatcaaaaggatcaa
aaagatttacacactagattgccacctttatctccttctccagagaggtctccaccagtt
ggaaggaagaggagtgccagcgaagataaaaggtcccctagtccatatgagagtcctgcc
aggcaaagaagagagcgaatcacacatgatggtagcttgagtcctttgcaacaaagagtg
aggaaaccactgaaggatagtccagaatctggcaaagaccatgaagaaactggctatact
cgggagggcggggactataattctacatcctcacataaacgacctttgtatccatctaac
atggataagcagagagacccccctgtgaagtttcactgcaaggatgagcaagctcttgaa
agattagctagtcatcagaccaccgattcccgaaactatccagataacatggactcaagg
aagaaagaccaggatataaagattgggaagtcttctgggagaggtggtgatcaagaaact
ctcgaagcacaaaagtctccatctttgtataagaacgagaaagaccgctcacgcttaaac
aatgttaaggatagtgacaaacgccggaaatcagaaactgtgccagtgacagctgaaaaa
gtgcatcatagtaatggcagtggtgcattggattctggttctgaggaaagtggtaagcac
agaggagagaagagggaaaagtcaaagcataagaggtcacatcgacatgaagtggctttg
gatgatgatggcagccatggttctgaaattgaagagagaaaagagactaaaaggaggagg
aaggaggaaaagaagttgcgaaaggaggagaagcgtcgacggcatgaagagcgacgccgt
aaaagagcggaacggcatgcggagaagctaaaattgaagggtcgtgatgatgctagctct
tctgatgatgaacatgttgggaggagggagtctcatccaagtgatgatgaagagacagaa
tctgatcagagaagacttgagattgagttacggaagaaggctcttgaatcacttaaagca
aagaagggcaccagtcactga
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