Populus trichocarpa (black cottonwood): 7485690
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Entry
7485690 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF1
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pop04131
]
7485690
04121 Ubiquitin system [BR:
pop04121
]
7485690
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7485690
Membrane trafficking [BR:
pop04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
7485690
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
7485690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1117
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-RING_5
zf-RING-like
Zn_ribbon_FGT1_2
zf-RING_16
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
7485690
NCBI-ProteinID:
XP_024453251
LinkDB
All DBs
Position
1:complement(26094511..26096130)
Genome browser
AA seq
364 aa
AA seq
DB search
MASTTATSYWCYRCARFVTVSPRNDDEEQNHANYITCPHCDGGFVEEIQSNNDNRRNRSR
VSNFIRNRRNAGDRSPYNPVIVLRGTSPAVAADDNDEGSAYEFYYDDGTGSGLRPVPETM
SEFLMVSGFDRLLDQLSQIEINSLGRSAPNPPASKAVVESMPSVEINETHVVSETYCAVC
KEAFEIGDEAREMPCKHIYHSDCILPWLAMRNSCPVCRHELPVDNSDEEEAEGEVVGLTI
WRLPGGGFAVGRFSGGRRGGEREFPGVFTEMDGGGNGGLSGNRRPRDWDSWVTRSRGRGD
SNGSGGFRRVFRGLGSFFRRIRPNSSSRMHDVSGTESIERSYSSHVTRRRRGLDLGVEEG
ADRW
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacgacggccacgtcgtattggtgttacagatgtgcacgcttcgtcaccgtt
tcacctcgcaacgacgacgaagaacaaaaccacgccaactacatcacgtgtcctcactgc
gacggtgggtttgtcgaagagatccaatccaacaacgacaaccgtcggaaccgtagtcgg
gtttccaacttcatccgaaaccgccgcaacgctggcgaccggtctccgtacaaccccgtg
atcgtcctccgcggaacaagccccgccgtcgccgccgatgacaacgatgaaggaagcgcc
tacgagttctactacgacgatggaactgggtcgggtcttcgacccgtacctgagacgatg
tcggagtttttaatggtttctggttttgatcgcttactggaccaattatcacagattgag
ataaacagcttaggccggtcggcccctaacccgccggcgtcgaaagccgtggttgaatca
atgcctagtgtagaaataaacgaaacgcacgtggtttcggagacgtactgtgcagtgtgt
aaagaggcatttgagattggagacgaagctcgcgagatgccttgcaagcatatttaccac
tctgattgcatcttgccctggcttgcgatgcgaaattcttgtccggtttgtaggcacgag
ttgcccgtggataattctgacgaggaggaggcggaaggggaggttgtggggttgactata
tggaggttgcctggaggtgggtttgctgttgggaggtttagtggggggaggagaggtgga
gagagggagtttccgggtgtttttacggagatggatggcggtgggaatggtgggcttagt
gggaacaggaggcctcgagattgggattcttgggtaactaggagtaggggaaggggggac
agtaatggcagtgggggttttaggagagtttttcgtggtttggggtcgttttttaggagg
attaggcctaattcatcgtcaagaatgcatgatgtatctggaactgaatcgattgagaga
agttattcgagtcatgtaacaaggaggagaagaggattggatttgggagttgaggagggg
gctgataggtggtga
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