Populus trichocarpa (black cottonwood): 7485825
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Entry
7485825 CDS
T01077
Name
(RefSeq) phytochrome B isoform X1
KO
K12121
phytochrome B
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
7485825
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_9
PAS_4
PAS_8
PAS_3
Motif
Other DBs
NCBI-GeneID:
7485825
NCBI-ProteinID:
XP_002314949
UniProt:
B9HX24
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Position
10:15723998..15731381
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AA seq
1134 aa
AA seq
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MASQSQRQSNQPVHNQAQSSGTSNMRQHHHATESVSKAIAQYTVDAQLHAVFEQSGGTGR
SFDYSKSVRTTNQSVPEQQITAYLSKIQRGGHIQPFGCMIAADEQSFRVIAYSENAKDML
GLTPQSVPSLEKQEILFVGADVRILFRPSSAVLLEKAFGAREITLLNPIWIHSKNSGKPF
YAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVV
DSVRELTGYDRVMVYKFHEDEHGEVVAENKRVDLEPYIGLHYPSTDIPQASRFLFKQNRV
RMIVDCHAIPVRVIQDEALMQPLCLVGSTLRAPHGCHAQYMENMGSIASLAMAVIIYGND
EEAIGGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLLEKHV
LRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGQYYPLGVTPTETQIKDIVE
WLLTLHGDPTGLSTDSLADAGYPGAAFLGDAVCGMAVAYIAERDFLFWFRSHTAKEVKWG
GAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEAT
NSKAVVHTQLKDMELQGMDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVAELTG
LSVEEAMGKSLVHDLVYKEYEEIVDKLIHRAVKGEEDKNVEIKLRTFCSEHQKKAVFVVV
NACSSKDYMDNIVGVCFVGQDITGQKVVMDKYVLIQGDYKAIVHSPNPSIPPIFASDENT
CCLEWNTAMEKLTGWSRGEVVGKMLVGEVFGSCCRLKGPDALTKFMIALHNAIGGIDTDK
LPFSFFDRNEKNVQTLLTANKRVNMEGDIIGAFCFLQIASPELQQTLKVQKQQEKKSFAR
MKELAYICQEIKNPLSGIHFTNSLLENTDLTEDQQQFLETSAACEKQILKIIRDIDLESI
ENGSLELEKAEFLLGSVINAVVSQAMLLLRERNLQLLRDIPEEIKTLAVYGDQARIQQVL
ADFLLNMVRYAPSSAGWVEIHVCPTLKQISDGHTLVHTEFKIVCPGEGLPPELVQDMFHS
SRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLVVLEVPMPQKVGKGAAD
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggcatcacaatcacaaaggcaaagcaatcagccggtacataatcaagctcagtcttcg
ggtaccagtaacatgaggcaacaccatcacgccacagaatcagtaagcaaagcaattgca
caatacacagtcgatgcacaactccatgcagtttttgaacaatctggtggcactggtagg
tcatttgattactcaaagtctgttagaactactaaccagtcagtacctgaacaacaaatc
acagcgtatttgtcaaaaattcaaaggggtggtcatattcagccatttgggtgcatgatt
gctgcagatgaacagtcttttagggtcattgcgtatagcgaaaacgccaaagatatgctt
ggtttaactccacaatcagtcccttctttagagaaacaagaaattctctttgttggggct
gatgtaaggattctttttaggccttccagcgctgttttgcttgaaaaagcatttggtgca
agggaaataacattgttgaatccaatttggattcattccaagaattccgggaagcccttt
tacgcaattttgcataggattgatgttggtattgttattgatttagagcctgctaggact
gaagaccctgctttatctatagcaggggctgttcagtctcagaagttagcagttcgtgcg
atttcacaattacaatcacttcctggtggggatattaagttattatgtgatactgttgtg
gacagtgtgagagagcttaccgggtatgatagagttatggtttataagtttcatgaggac
gagcatggtgaggttgtcgctgagaataaaagggttgatttggaaccttatatcggtttg
cattatccttccacggatataccacaagcttcgaggtttttgttcaagcagaatagggtt
aggatgattgtggattgtcatgctataccggtccgtgttattcaggatgaggcgcttatg
cagcctttatgcttggttggttcgactcttcgtgctcctcacggttgtcatgctcagtat
atggagaatatggggtcgattgcttcattggccatggctgttattatttatggaaatgat
gaagaagctatcggtgggaggaactcgatgaggctttggggtttggttgtttgccatcac
acttctgctaggtgtattccatttccgcttcgttatgcgtgtgagttcttaatgcaggct
ttcgggcttcaattgaacatggaattgcagttggcatcgcagttgttggagaaacatgtc
ttgaggactcagactctcttatgtgatatgcttctccgcgactctcctactggcattgtt
actcaaagtccaagtatcatggaccttgtgaagtgtgatggggcagctctttattaccag
gggcagtattaccctttaggcgtgaccccaactgaaacccaaataaaagatattgtggag
tggttgttgacccttcatggagacccaactggattaagcactgacagtttggccgatgct
gggtatcctggggcagcctttctcggcgatgcagtttgtgggatggctgttgcttatatt
gctgagagagattttcttttttggtttcggtctcacactgcaaaggaggtcaaatggggt
ggtgcgaagcatcacccagaggacaaggatgatgggcagaggatgcatccgcgttcatca
ttcaaggcattcttagaggtggtgaagagccggagtttaccgtgggagaatgcagaaatg
gatgccattcattctttgcagcttattttgcgagactcatttagggatgctgaagcaacc
aattctaaggctgttgtacatacccagctcaaggatatggaattgcaaggtatggatgag
ctcagttcggttgcaagagaaatggttagactaatagagactgcaactgctccgatattt
gctgtagacgttgatggccgcataaacgggtggaatgcaaaggttgctgagttgactgga
ctctcagttgaggaagccatggggaagtctttggttcacgatcttgtttataaggaatat
gaagaaattgttgacaagcttattcatcgtgcagtaaaaggcgaagaagataagaacgtg
gagataaaattgaggaccttttgctctgaacaccaaaagaaggctgtttttgtggtggta
aatgcttgttcgagcaaggattacatggataatatagttggggtttgctttgttggtcag
gatattacaggtcaaaaagtggtaatggacaaatacgtccttatacaaggtgattataag
gctattgtacacagtcccaatccttcgatccctccgatttttgcttcagatgagaacaca
tgttgcttggagtggaacactgccatggaaaaactcacaggatggtccaggggcgaagtt
gttgggaagatgttggttggggaggtttttggcagttgctgtaggctcaagggtccagat
gcactgacaaaattcatgattgccctgcacaatgcaattggagggatagatacagacaag
ttacccttttcattctttgaccggaatgaaaaaaatgtgcaaactctcttgacagctaac
aagagggttaatatggagggagatattattggagccttctgcttcttgcagattgcaagt
cctgagttgcagcaaactttgaaagttcagaaacagcaggaaaaaaaaagctttgcaagg
atgaaagagttggcttacatttgccaggaaataaaaaatcctttaagtggtatacacttt
accaactcgcttttggagaacacagacttgactgaagatcaacagcagtttctcgagact
agtgctgcatgtgaaaaacagatattgaagatcatacgagacattgatcttgagagcatt
gaaaatggttcactggagcttgagaaggctgaatttttacttgggagtgtcataaatgct
gttgttagccaagcaatgctattgctgagggaaagaaatctacaattgcttcgtgatatt
ccagaagaaataaaaacgctggcagtttatggtgatcaggcaagaattcaacaagtattg
gctgatttcttgttgaatatggtgcgttatgctccatcttcagcaggttgggtggagatt
catgtttgtccaacactgaagcaaatctctgatggacacactctcgtgcatacagagttc
aagattgtttgccctggtgaaggtcttcctcctgaattagttcaagacatgttccatagt
agtagatgggttactcaagagggcctagggctcagcatgtgcaggaagatcttaaagcta
atgaatggtgaagtccaatatattagagagtcagaaagatgctatttcttagttgtcctc
gaagtacccatgcctcaaaaagttggaaagggtgctgcagactag
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