KEGG   Populus trichocarpa (black cottonwood): 7485951
Entry
7485951           CDS       T01077                                 
Name
(RefSeq) protein decapping 5 isoform X1
  KO
K18749  protein LSM14
Organism
pop  Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:pop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7485951
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     7485951
SSDB
Motif
Pfam: LSM14 FDF SM-ATX
Other DBs
NCBI-GeneID: 7485951
NCBI-ProteinID: XP_024462869
LinkDB
Position
8:7329902..7334989
AA seq 649 aa
MAAGENSMNTASTSRSNSTADSYIGSLISLTSKSEIRYEGILYNINTEESSIGLKNVRSF
GTEGRKKDGPQILPSDKVYEYILFRGSDIKDLQVKSSPPVQSFPPINNDPAIIQSHYPRP
VATSTSLPSAVSGSLTDLGSNNGPGGLPGSNFQGGLPLYQPGGSLGAWGVSPPPPNANGN
GLAMPMYWQSYYGPPNGIPHLHQSLLRPPPGLAMPPSMQQPMQYPNFNTSLPTGALNLAS
STLPPLNLPASTLPPLNLPASTLPPSNLLVSTLPASLPDVPLPLFPGITSSLNFTSHSSV
PSTLPSTVPLIPAASLPSETLPSLIPNKVTISALPTTNLGVTFPVLSPVSTSSSDLNTIV
PPISNKPSSISGPTMPYQSVTQSASSAVLASNSLRTETPTPTPSLVTPDQLLQSGPTIVP
SPQPVQTAHKDVEVVKVSPAAAAAAPSPEPSVPVATQAQPPILPLPVPSRASHKPNGATF
HARHGYRGRERGRGSGSSRPVTKFTEDFDFIAMNEKFKKDEVWGHLGKNNKSHSKDREDG
NASGEDDSQDEDENELAKIEVKPVYNKDDFFDTISCNALGNDSQNGRTRFSEQMKLDTET
FGDFTRYRGGRGGRGPPRGGRSRGSYYGRGYGYGYVGRGRGRGAPNHVS
NT seq 1950 nt   +upstreamnt  +downstreamnt
atggcagcaggtgagaacagtatgaatacggcgtcaacttcaagatcgaattcgacagcg
gattcgtatatcggaagcttgattagcttgacatcaaagagtgagatcagatacgagggt
attctttataatatcaacactgaagagtccagtattggattgaaaaacgtgcggtcgttt
ggaacagaagggcggaaaaaggatggtccacaaatccttcctagtgataaagtttatgaa
tacatattgttccgtggaagtgacatcaaggacttgcaggttaagtcttctccaccagtc
cagtcttttccacctataaacaatgacccagcaatcatacagtctcattatcctcgccca
gttgccacctccaccagcttgccttctgctgtcagtgggtcgttgactgaccttggatcc
aacaatggaccaggggggctccctgggtcaaatttccaaggtgggctgcctttatatcaa
cctggagggagcttaggagcatggggagtttcacctccccccccaaatgcaaatggtaat
ggccttgcaatgccaatgtactggcaaagctactatggcccccctaatgggattccacat
ttacaccaatctttgcttcgaccgccacctggacttgcaatgcctccttccatgcagcaa
cccatgcaataccccaatttcaatacttctttgcccactggtgccttaaatttagccagt
tcaaccttgccccctttgaacctgccggcttcaaccttgccccctttgaacctgccggct
tcaaccttgcccccatcaaacctgctggtgtcaaccttgccagcttccttgccagatgtc
ccgcttcctctatttcctggcatcactagttcccttaatttcacttcccattcctcagtg
ccatcaactttgccttcaactgtacccttaatacccgctgcttctctgccttctgaaaca
ttaccaagtctgatacctaataaggttactatttctgcacttcctacaaccaatttaggt
gttacttttccagtgctatctcctgtgtcaacttccagctcagatttaaacaccattgta
ccgccaatctccaacaaacctagttcaatttctggcccaacaatgccttatcaaagcgtg
acacaatctgcatcctctgctgttttagcatccaattctcttcgcacggaaacaccaact
ccaactccttctttggtaacccctgaccagttattgcaatcaggaccaacgatagttcct
tctcctcagcctgtgcaaacagcccataaagatgttgaggttgttaaagtatcaccagca
gcagcagcagcagcaccatcaccagaaccatcagtgccagttgccacacaagcgcagcca
cccatactcccattgcctgttccttcacgggctagccataagccaaatggagctactttt
catgctcgccatggttaccgtggacgtgaaagaggaagaggatctgggagctcacgaccg
gtgacaaaattcactgaggattttgattttatagcaatgaatgagaagttcaagaaggat
gaagtttggggtcatcttggcaagaacaacaaatctcattcgaaggatagagaagatgga
aatgccagtggtgaagatgattctcaagatgaagatgaaaatgaactagctaagattgag
gttaagcctgtttataacaaggatgacttttttgataccatctcatgtaacgcgcttggt
aatgactcacaaaatggaaggactagattctcagagcaaatgaaattagacacagagacc
tttggggactttacaaggtaccggggcggacgaggtggtcgtggtcctccacgtggtggt
cgttctcgtggatcttattacggaagggggtatggatatggctatgttgggaggggccgg
ggccggggcgcgcctaatcatgtttcttag

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