KEGG   Populus trichocarpa (black cottonwood): 7486325
Entry
7486325           CDS       T01077                                 
Name
(RefSeq) UBP1-associated protein 2B
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7486325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pop03019]
    7486325
   03041 Spliceosome [BR:pop03041]
    7486325
Messenger RNA biogenesis [BR:pop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     7486325
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     7486325
Spliceosome [BR:pop03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    7486325
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 Nup35_RRM_2 Cut8 RRM_3 FANCI_S1-cap
Other DBs
NCBI-GeneID: 7486325
NCBI-ProteinID: XP_024456202
LinkDB
Position
5:5557066..5560184
AA seq 391 aa
MAKTEKTKKLKTAKKPETTTKQKPLKKPKLKIRKTKPLPSDPADLSTLLEPYTKDQLIDL
ITNSAIKNPSLYSLIHQHADRDVTHRNVFVHGFSWDTTRQDLVSAFAAFGEIEECNVVID
KATGKAKGYGFVLFKSRKAAISALKETKRMVNDRMASCQLASVGSANAASAAKGKELEGG
VRKIFVSNVGMSTDKEKLRAFFEKFGEIENGPIGFDKETGKSRGYALFVYKTVEGAIKAL
EEPHKIFEGQQLRCSVATEGKNKTNQNVAQGMQQVVQQQPVHQQPQGQFLAAAQNLALFG
QHPGFNPLYSALLGSTGVGGGMISPVIGQSMVPTATSQVGGLGVGSQSTLEAYRAAQVLQ
HVYSSTTQIGQTGMGRGQGAGGSFTGYPKYM
NT seq 1176 nt   +upstreamnt  +downstreamnt
atggcaaaaaccgaaaaaactaagaaactcaagaccgccaaaaaaccagaaaccaccacc
aaacagaaaccgctaaagaaacccaaactcaagatacgaaaaaccaaacccctcccttca
gaccctgccgatctctcaacccttctcgaaccctacacaaaagaccaattaatcgaccta
attaccaactctgccattaagaacccctctttgtattctctaattcatcaacacgccgac
cgcgatgtcactcaccggaatgtttttgtccacggcttctcctgggacacaacgcgccaa
gacctcgtatctgccttcgccgccttcggagaaatcgaggaatgcaatgttgtaattgat
aaagcaacaggtaaagcaaaaggctatggttttgtcttgtttaaatcgcgaaaagctgcg
atctctgcgttgaaggaaacgaaaagaatggttaatgatcggatggctagttgtcaattg
gcttctgtaggatctgctaatgcggcctcggcggccaaagggaaggaattggagggtggg
gtgaggaagatatttgtgagtaatgtaggaatgagtactgataaggaaaagttgagagct
ttctttgagaaattcggagaaattgagaatgggccaattgggtttgataaggagactggg
aagtcaagaggttatgctttgtttgtttataagaccgtggagggagccataaaggcatta
gaggagcctcataagatatttgaagggcagcaattgcgttgctcggtcgcgacagaagga
aaaaacaagactaatcaaaatgtggcgcagggaatgcagcaggtggtacagcagcagccg
gtgcatcaacagcctcaagggcagtttttggcagcggcgcagaatctggcattgtttggt
cagcatcctgggtttaatccactgtatagcgcattgttggggagcacaggtgttggtggt
ggcatgatcagtccagtaatcggccagagtatggtgccaactgcgacgagtcaagtgggg
ggattgggagttgggagccagtcaacactggaggcatatagggctgcgcaagtgttgcag
catgtttattcgagcactacgcagattgggcagacagggatgggtaggggtcagggggct
ggtggatcatttaccggctatccaaaatatatgtga

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