Populus trichocarpa (black cottonwood): 7486390
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Entry
7486390 CDS
T01077
Name
(RefSeq) serine--tRNA ligase
KO
K01875
seryl-tRNA synthetase [EC:
6.1.1.11
]
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
7486390
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
pop01007
]
7486390
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pop03016
]
7486390
Enzymes [BR:
pop01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.11 serine---tRNA ligase
7486390
Amino acid related enzymes [BR:
pop01007
]
Aminoacyl-tRNA synthetase
Class II (C/G)
7486390
Transfer RNA biogenesis [BR:
pop03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
7486390
Prokaryotic type
7486390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_2b
Seryl_tRNA_N
YlqD
DUF3967
YabA
OmpH
DASH_Spc34
Motif
Other DBs
NCBI-GeneID:
7486390
NCBI-ProteinID:
XP_002306393
UniProt:
B9H603
LinkDB
All DBs
Position
5:6627719..6632867
Genome browser
AA seq
447 aa
AA seq
DB search
MLDINLFREEKGNNPEKIRESQRRRYANTEIVDEIIQFDNEWRQRQFELDSLRREFNKQN
KKVAQLKIAKEDATEAIRETEETKKLIADKEKEVQEAKDALYSRLPTIGNLVHDSVPVND
NEDFNAVIRAWGEKRVEKKLRNHVDLVELLGIADLKKGADVAGGRGFYLKGDGVRLNQAL
INFGLEFLEKRGYTALQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL
CAYHLDDWIHPSQLPIRYAGYSSCFRKEAGAHGRDTLGIFRVHQFEKVEQFCITSPNGND
SWEMHEEMIKNSEEFYQELNIPYQVVAIVSGALNDAAAKKYDLEGWFPASNTYRELVSCS
NCTDYQSRRLEIRYGQKKSNEQVKQYCHLLNSTLTATERTICCILENYQKEDGVEVPEPL
RKYMSGKEFLPFQNKPSTEGKGKKPKA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgttagacatcaacttgtttcgcgaagagaaaggcaacaacccagagaaaatacgcgag
tcacagcgccgtcgttatgctaacaccgagatcgtcgatgaaatcattcagtttgataac
gaatggcggcaacgtcaatttgagcttgatagtttgcgtagagagtttaataagcagaac
aaaaaagtcgcgcagcttaaaatcgcgaaagaggatgcaacggaagcgattagagagact
gaagagacgaaaaaattgatagcagataaggaaaaggaggtacaagaggctaaagatgca
ctgtattcaagattgccaactattggtaatcttgtgcacgactcagtcccggttaacgat
aacgaggattttaatgctgtgattcgggcatggggggagaagcgtgttgagaagaaattg
aggaatcatgttgaccttgttgaacttcttggaattgcggacttgaagaaaggtgctgat
gtagcaggaggtagaggcttctacctcaaaggtgatggtgtccgacttaaccaagcattg
atcaactttggcctagaattcttggagaagagggggtacacagccttgcaaacacccttt
tttatgagaaaagatgtcatggcaaagtgtgcccaattagcacaatttgatgaagaactt
tacaaggttactggtgaaggagatgacaaatatctaatcgcaactgctgaacaaccacta
tgtgcgtatcatcttgatgattggatccatccttcacagttaccaatcagatatgctggg
tactcatcttgtttccgtaaagaggctggtgcacatggtcgtgatactctaggcattttc
agggttcatcagtttgagaaagtggaacaattctgcattaccagcccaaatggcaatgat
tcttgggagatgcatgaggaaatgatcaagaactctgaggagttttaccaggagctaaac
atcccgtatcaagttgttgcaattgtttctggtgctttgaatgacgcagcagcgaagaag
tatgacttggaaggctggtttcctgcttccaatacttacagagagctggtctcctgttcg
aactgcacagactaccagtcaagaagattagaaattagatacgggcagaaaaagagcaat
gagcaggtaaagcaatattgtcacttgttgaactctacccttacagcaacagagaggact
atttgctgcatcctggagaactatcagaaggaagatggagtagaggttccagagcccctg
agaaaatatatgagcggcaaagaattcctacctttccaaaataagccgtccactgaaggc
aaggggaagaaaccaaaagcctag
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