KEGG   Populus trichocarpa (black cottonwood): 7486391
Entry
7486391           CDS       T01077                                 
Name
(RefSeq) probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pop00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    7486391
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pop03041]
    7486391
Spliceosome [BR:pop03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    7486391
 Complex B
    7486391
 Complex C
   U2 SnRNP specific factors
    7486391
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin
Other DBs
NCBI-GeneID: 7486391
NCBI-ProteinID: XP_002306394
UniProt: B9H605
LinkDB
Position
5:6649551..6652843
AA seq 805 aa
MSSTAILPLPAPPVNGDGSPPPPSQVVEQQPREDRPASEEQSRAPVATHTRTIGIIHPPP
DIRSIVDKTSQFVAKNGPEFEKRIIANNANNAKFNFLNSSDPYHAYYQHRLAEFRAQNQA
PGQQPTSQPADSAAPDSAPKPDSAADENEAATKPDPSAQFRLPPPKVLEPPEAEQYTVRL
PEGITGEELDIIKLTAQFVARNGQAFLTGLTNREMNNPQFHFLKPTHSMFTFFTGLADAY
SKVLMPPKGLTEKLTKSVSDMTTVLERGLHRLEWERSQEQARQKAEDEIEQERMQMAMID
WHDFVVVETIDFADDEDEDLPPPMTLEEVIRRSKISAMDEDEIIEPGKEVEMEMDEEEMQ
LVEEGMRVASIEENDGEKGTRTNEEQEPPMRIVKNWKRPEERIPAERDPTKFVVSPITGE
LIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISRNIVGLARLRPDIFGTT
EEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTANQAMSQNANGEDQNEAVNNDVRNL
PGPAAPPPRPGMMTVRPLPPPPGLQLNLPRAPPNTVQYSGPTAGAYLVHPQRPVSIPIMQ
PNYPPPMQMAPGQQHIMVNRPPPMPPLMSGNPSLPVPPPPGSEYNSMAVPRSFAPHPVSQ
PGLHMMPPPPPLPQGMPPPPPPEDAPPPLPDEPEPKRQRLDDSALVPEDQFLAQHPGLVR
VTVAVPNIDEGNLKGQVLEITMQSLSETVGSLKEKIAGEIQLPANKQKLSGKAGFLKDNM
SLAYYNVGPGELLALSLRERGGRKR
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgtcttccacagcaatcttaccgcttccagcacctcctgttaatggagatgggtctcct
cctccaccctcgcaagtggtagaacagcagccgagggaggatagaccggcaagtgaggag
cagagcagagcaccagttgcgacccatacgagaactattggaattattcatcctccacct
gatattaggagtattgttgataagacctcgcaatttgtggcaaaaaatggacctgagttt
gagaagaggattattgcaaacaatgctaataatgccaagttcaattttttgaattcgtcg
gatccgtaccatgcttattaccagcatcgtttggcagaatttcgtgctcagaatcaagct
cctggacagcagcctacttcacagcctgcggattcagctgctcctgattcagctccgaaa
cctgattcagccgctgatgaaaatgaagctgctacgaaaccggatccttcagcccagttt
agattacctcctcctaaggttcttgaacccccagaagctgagcagtatactgttcggctt
ccagaagggattactggagaggaacttgatattattaagctcacagctcagtttgtagct
cgaaatgggcaagcattcttgactggattgacgaatagggagatgaacaatcctcagttc
cactttttgaagccaacccacagcatgttcaccttttttactggacttgctgatgcatat
tctaaagttttgatgcctccaaagggtttgaccgagaagttgacaaagagtgtttctgac
atgaccactgtgcttgaaaggggcttgcatcgccttgaatgggaacgctcacaggagcag
gcaagacagaaagctgaggatgagattgaacaggagcggatgcaaatggcaatgattgat
tggcatgattttgttgtggttgagactatagactttgcagatgatgaagacgaggacttg
ccccctccaatgacacttgaggaagttataaggaggagcaagatatctgctatggatgaa
gatgaaatcattgagcctggaaaggaggtggaaatggaaatggatgaagaagagatgcag
cttgttgaggaaggcatgagggttgcaagtattgaagagaatgatggtgagaagggcaca
agaacaaatgaggaacaagaaccacctatgaggattgtgaagaactggaagagacccgag
gagaggatccctgctgaaagagacccaacaaagtttgttgtttctcctatcactggtgag
ctaattccaattagtgagatgtccgagcacatgagaatttccctcattgatcccaagtac
aaggagcaaaaggaaaggatgtttgccaagattcgggaaactactcttgcacaggatgat
gagatctctcgtaacatagtgggactggcacgcttgaggcctgatatctttggcaccaca
gaggaagaagtttctaatgcagtgaaggctgaaattgagaagaagaaagatgagcagcca
aagcaggtcatatgggatggtcacactggtagtattgggcgcactgcaaaccaagctatg
tctcagaatgctaatggcgaggatcaaaatgaagctgttaacaatgatgtaaggaacctt
cctggtccagcagctcctcctccccgacctggtatgatgactgtccgtcccctccctcca
ccaccaggactgcagttgaatcttcctcgtgcacctccaaatacagttcaatattctggt
cccactgctggggcatatcttgtacatccgcaaaggccagtcagtattccaattatgcag
ccaaattacccccctccaatgcaaatggcacccggacagcaacacattatggtaaatcga
cccccccctatgcctccattaatgtctggcaatccaagtttacctgtgccgcctccacct
ggatcggaatataattccatggcagttcctcgatcttttgcccctcatcctgtctcccaa
cctggattgcatatgatgccaccaccacctccgttgcctcaaggaatgcctccaccaccc
ccacctgaggatgctcctcctccacttccagatgagccagagccgaagaggcagaggctt
gatgactctgcgcttgttcctgaagatcagtttctggctcaacatccgggacttgtgcgc
gtcactgttgctgttcccaatattgatgaaggaaatctcaaaggccaagttctggagatt
acaatgcagtccttgtctgaaactgttggcagcctaaaggagaaaattgctggagagatc
caacttcctgcaaacaaacagaaattgagtggaaaagctggttttctcaaggataatatg
tcactggcatattacaatgttggaccaggagaattgctggctctctctttgagagagcgt
ggtggtagaaagagatga

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