Populus trichocarpa (black cottonwood): 7486557
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Entry
7486557 CDS
T01077
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 17 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pop01002
]
7486557
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7486557
Enzymes [BR:
pop01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
7486557
Peptidases and inhibitors [BR:
pop01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
7486557
Ubiquitin system [BR:
pop04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
7486557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
zf-MYND
PilA4
Motif
Other DBs
NCBI-GeneID:
7486557
NCBI-ProteinID:
XP_002307344
LinkDB
All DBs
Position
5:complement(14955305..14962341)
Genome browser
AA seq
1125 aa
AA seq
DB search
MHVEGDLGFSSLVVLVFCVVIIPLGCFIIRCKWRGAVARKEDIKRLLVLAAEEAARAEFE
AAASYGTVPVLTNNYQCAVCFCPTTTRCARCKAVRYCSGKCQIIHWRQGHKEECHPPTTT
YHINDDGSNPGQRAAKGDQHDIYDGRHENRPVDTFSVEPVVSDSNYSPGVSFVKDDDIKV
DSVLDTEGTDSIFESSGTSFSGFSTPTGSSFSEFSAHSGGESSDNVSVSESIGSNETEGS
DGQMPADTAPDTLESSLNKVDVTKPLSPKFATLVDSVDSFNKLSKSNQSKPHGNDGESQC
SSSSSGHSISARNDDSITKPAKVSSGFWGRTLDSAVSSSDTMDRSAMSNFTGPVNSKRSN
DESFIHFKFNLSGSDAPTQHAKSTRVNDIIPDDALPSASDRALSSEKNGVDAQKVKNSPC
ISCERSSHIDVNSRGDLNVSSERKSVSSSSSYGHVSSSSGGVKLDAGASKVCRSQSLISE
RSDVVVNDPVGALHLSKSRLSSNASQTHLTSTIGGHSVSSVQYGNVELGAASSSQMASSS
PSSINGLKSSVWKVVDQFRGPKCGRYSKKGLFPYDLFVKLYNSSKAEMRPCGLINCGNSC
YANAVLQCLAFTPPLTSFFVQGLHSKSCLNRECCFSCEFESIILKAKEGKSPLSPLGILS
QLQNIGSQLGNGREEDAHEFLRYAIDAMQSVCLKEAGVNAMDSFAEETTLIGLTFGGYLH
SKIKCMKCHYKSERQERMMDLTVEIEGNIGKLEDALRRFTSAEILDGDNKYQCGRCKSYE
KAKKKMTILEAPNVLTIALKRFQSGKFGKLNKSIRFPEILDLAPYMSGTSDKSPIYRLYG
VIVHLDVMNAAFSGHYVCYVKNIQNKWFKIDDSTVTAVELERVLSKGAYMLLYARCSPRA
PRSIRSRIISSDPKNKCYTSKINATNTALDSRSTSMQSSAFQLHPDSIPPDNLASVESFY
MKFHRLQRILEEDSSSDSFSFTSGNSDEGSCSTDSTHDSTSTDDLSDYIFGGWNSWQNTS
DSDTSSSSPPLYSRQSPHGEMNQHGSYADSGVGGSDLWDRIPSESSKLVYLEGKGGTFLH
SDTAKQGRKLASSSSYDSTKLGSVNPLNGVKSGVSFRRTASERTD
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtcgagggggatctagggttttcgagcctggtggtccttgttttctgtgtagtg
attattccgctgggctgttttataattaggtgtaaatggcgaggtgcggttgcgagaaag
gaggatatcaagaggctgttggttttggcagcggaggaagccgctagggctgagtttgag
gccgcggcttcatacggcaccgttccggtgttgacaaataactatcaatgtgctgtttgt
ttttgcccgacaacgacacggtgtgcccgctgtaaagctgttagatattgttctggcaag
tgtcaaattatccactggcgacaaggtcacaaggaagaatgccatcctcctaccactaca
tatcacattaacgatgatggaagtaatcctggccagagggctgcaaagggagaccaacat
gatatttatgatggcagacacgagaatagaccagtcgatacattctctgtggagcctgta
gtgtctgattccaattactctcctggagtttcatttgtaaaggatgatgatattaaagtt
gattctgttttagatacagaaggaacagattccatttttgaatcatcaggcacctcattt
tctggattttctactcctactggctcttcgttttctgaattctctgctcattcaggtggt
gaatcatctgataatgtctctgtaagtgagagcatcggttcaaatgaaactgagggatca
gatggacaaatgccagctgatactgctcctgacacactggagtccagtttgaacaaggtg
gatgtgaccaagccattgtctccaaagtttgctactttggttgattctgtagatagtttt
aataaattgagtaaatcaaatcagagtaaacctcacggaaatgatggggagagccagtgc
tcatctagctcttcaggtcatagcatcagtgccaggaatgatgattcaatcacaaagcca
gctaaagtttcttctggtttctggggtagaaccctggattctgctgtgtccagcagtgat
accatggacagatctgctatgtcgaatttcactggccctgttaacagcaagcgatcaaat
gatgaatcattcatacatttcaagtttaatctatctggaagtgatgctcctacccagcat
gcaaaaagcacaagggtgaatgacatcataccagatgatgcactcccttccgcttctgat
agagctctttcatcagaaaagaatggtgttgatgctcaaaaagtcaagaactccccatgc
ataagctgtgaaaggtccagtcatattgatgttaactctcgtggtgatttgaatgtttcc
agtgagcgtaaatctgtatcatcatcctcttcttatggtcatgtttcttccagttctgga
ggagttaaattagatgcaggtgcttcaaaagtatgcagatctcaatccttgatatctgaa
agatcagatgttgttgttaatgaccctgttggtgctttacatctatccaagtccagatta
tcatctaatgcttctcagacccatttgacttctaccatcggtgggcactcagtttcaagt
gtgcaatatggaaatgtggaactgggtgctgcaagttcctctcaaatggcaagctcttct
cctagttctattaatggattgaagtcatcagtgtggaaagttgttgaccaattcagagga
cctaaatgtggaagatatagtaaaaagggccttttcccatatgatttatttgtaaagtta
tacaattcgagtaaggcggaaatgcgaccatgtggtcttatcaactgtggaaacagctgc
tatgctaatgctgttctacaatgcttggcatttactcctcctttgacttcgttttttgta
caagggctccattccaaatcctgtttaaatagagaatgttgcttctcttgtgagtttgaa
agtataattttgaaggcaaaggaagggaaatctccactttctccccttggcattctatcc
caactacagaatatcgggagtcagcttggtaatgggagagaagaagatgcacatgaattc
ctaaggtatgcaattgatgcaatgcaatctgtttgccttaaggaagctggggtaaatgca
atggactcctttgcagaagaaaccactctcataggccttacattcggaggctaccttcac
tcaaagataaaatgcatgaagtgccattacaagtcagagcggcaagaaagaatgatggat
cttactgttgaaatagaggggaatatagggaagcttgaagatgcactaagacgattcacg
agtgctgagattctggatggagacaacaagtaccaatgtggcagatgcaaatcttacgag
aaggcgaagaaaaaaatgacaatattggaggctcccaatgtccttacaatcgcattgaag
cgctttcagtctggtaaatttggaaagctcaataaatctatccggttcccagagatcctg
gacttggcaccatatatgagtggaactagtgataaatcacccatatacaggctttatggg
gtgattgttcacttggatgtcatgaatgctgcattttctggtcactatgtgtgctatgtc
aaaaacatccagaacaagtggttcaaaattgatgacagcacagttacagctgtggaactt
gaaagggttttatcaaaaggcgcatacatgcttctttatgcaaggtgctcaccaagggcc
ccaagatcgataaggagcagaataatatcttctgatcctaaaaataaatgctacacctcc
aaaatcaatgcaacaaacactgcattggattcaagatccacatccatgcaatcaagtgct
ttccaattgcatcccgattcaattcctccagataatttggccagtgttgaatctttctat
atgaagttccaccggcttcagaggattttagaagaggactcatcaagtgacagtttctct
tttactagtggcaactccgatgaaggttcgtgcagtactgacagcacccatgattctaca
agtactgatgacctttctgattacatttttggaggttggaactcttggcagaatacatct
gattcggatacttcttcatcttccccccctttgtactcaaggcaatcacctcatggtgag
atgaaccagcatggttcatatgcagattcaggggttgggggttctgatctttgggacagg
atacccagtgagagcagcaagctggtgtatttggaaggtaagggaggaacttttttgcat
tctgacacggctaaacaaggtagaaagttagctagtagtagtagttatgactcaacaaaa
ttaggatcagttaaccctttaaatggtgtaaaatccggggtatcctttagaagaacagcg
agcgaaagaacagattga
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