Populus trichocarpa (black cottonwood): 7486572
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Entry
7486572 CDS
T01077
Name
(RefSeq) E3 ubiquitin-protein ligase ATL15
KO
K10664
E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:
2.3.2.27
]
Organism
pop
Populus trichocarpa (black cottonwood)
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pop04121
]
7486572
Enzymes [BR:
pop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
7486572
Ubiquitin system [BR:
pop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
ATL proteins
7486572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_UBOX
zf-RING_5
zf-RING_16
zf-Nse
zf-C3HC4_3
Prok-RING_1
zf-RING-like
zinc_ribbon_16
RINGv
PHD_NSD
Tmpp129
Prok-RING_4
DUF1272
Motif
Other DBs
NCBI-GeneID:
7486572
NCBI-ProteinID:
XP_002307356
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All DBs
Position
5:complement(15647828..15649712)
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AA seq
436 aa
AA seq
DB search
MTTHTPSFLQLLGFNHALLMVLLLLYTSQFSIAQPARNSSMPPPPTPDNQNSTPQPKVNP
LMAILMVVLVSVFFLLGFFSVYVRQCADRRFRGTRFDPAAFAGAGRGSWRGNHGLEQEVI
DTFPTFLYSTVKGLKIGEGSLECAVCLIEFEDDQTLRLIPKCSHVFHPDCIDAWLTSHVT
CPVCRANLVPKPGDLPFNPVHVDDPKNDLVEPDSHDNVPDETQNEVQIHIRNEITREGRQ
QITRSPNMNLSSPVNQNRPLQSWSTGWRLNALISRSNSINNSLIQSEENRERFTLRLPQE
VHNQLINSRLNRTKSCGSFSRAMSPRRGYRSRSGGAGRSKNLFYHEQLDQEGRPPDRQGL
TMTPPFICRTGSVPSKDESTSDGVNATPPKNFLKSARSFKSPFDRLFLGIDNSNRNSNND
DVGERSFDRLRPDSQV
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacaactcacaccccttcatttctccaactcttgggcttcaatcatgccctcctcatg
gtcttgctccttctctatacttcgcagttttctattgcacagcctgcacgtaattcttca
atgcctccaccaccaacacccgataaccagaattccacgccgcaaccgaaagtcaatccg
ttgatggcaatactcatggtggttcttgtaagtgttttctttttactgggctttttctct
gtctacgtccgacagtgtgccgatcgaaggtttcgcgggactcgctttgaccctgccgca
ttcgcaggcgcagggcgcgggtcttggaggggaaatcacggccttgagcaggaggtcatc
gacaccttccctactttcctttattctacagtcaaaggtcttaaaattggcgaaggctcc
ctagaatgtgccgtctgcttaatcgagttcgaagatgaccaaacgctgcgtttgattccg
aagtgcagccacgtgtttcatcctgattgtatcgacgcctggctcacctcccatgtcacc
tgcccggtttgccgcgccaatttggttccaaaaccgggcgacttgccattcaatccggtt
catgttgacgacccgaaaaatgacttggttgaaccggatagccacgataatgtccctgat
gagacacaaaatgaagttcaaattcatatccgcaatgaaattacaagagaggggcgacaa
caaatcacaagatctccaaatatgaatttgtcaagcccagtcaatcaaaacaggccactt
caatcatggtcaacaggttggcggttaaatgcattaatttcgagatcaaattcaatcaat
aattcattgattcaatcggaagagaatcgcgaacgatttactctaaggttaccgcaagag
gttcataatcagttgataaactctcgcttgaaccgtacaaagagttgcgggtcattttct
agagctatgagtccaagaagaggttacaggagccgaagtggaggtgctgggcgaagcaag
aatctcttttatcatgaacaattggaccaagaaggaagaccgcctgaccgtcagggtttg
acaatgaccccaccttttatatgcagaaccggctcggttccatcaaaggatgagagtact
agtgatggggtgaatgctactccaccgaagaatttcctgaagtctgcaaggtcctttaaa
tcaccatttgatcgtttgtttcttgggattgacaatagcaacagaaacagcaacaatgac
gacgttggtgaacgatcatttgatcggctgaggccggatagtcaagtttaa
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