Populus trichocarpa (black cottonwood): 7486597
Help
Entry
7486597 CDS
T01077
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
pop
Populus trichocarpa (black cottonwood)
Pathway
pop04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
pop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
7486597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
Cryptochrome_C
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
7486597
NCBI-ProteinID:
XP_002307379
UniProt:
B9H731
LinkDB
All DBs
Position
5:complement(16358666..16363198)
Genome browser
AA seq
680 aa
AA seq
DB search
MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSL
AHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEILT
AQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDV
SRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATT
SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNH
PCTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVAS
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA
LSEMWQQEAASRAAIENGTEEGLGDSSESAPFAFPEDIHMEENHEPVRNNPPATNRRYED
QMVPSMTSSFLRIEDEETSDVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNTA
LSPFNISRGLTNVEDSTAESSSSGRRERDGGIVPVWSPPTSSYSEQFVGDDNGIGATSSY
LQRHPQSHQIINWRRLSQTG
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggaggtgggtgtagtatagtttggttcagaagagatctaagggtagaagataac
ccggcacttgcagctggtgtaagagcaggtgctgttgttgctgtgtttgtatgggcaccc
gaggaggaaggccattattatcccggtagggtctcaaggtggtggcttaaacaaagtttg
gctcatcttgactcttctttaaggagtcttggtacttctcttgttactaagagatcaact
gatagtgtttcttctcttcttgaggttgtcaaatctaccggtgctactcagcttttattc
aaccacttatatgaccccttgtcactggttagggatcaccgggcaaaggagattttgact
gctcaaggtattactgtaagatcttttaacgcggacttgctttatgaaccatgggatgtt
aatgatgcccagggccgtccgttcacaacctttgacactttctgggaaagatgcctcagc
atgccttttgatccagaggctccacttctcccgcctaagaggattatttcgggtgatgta
tccagatgcccttcagtcacgctggtatttgaagatgaatcagagaaaggaagcaatgca
cttcttgcaagagcatggtcacctggatggagcaatgctgatagggctttgaccactttc
attaacggaccactaattgagtactctatgaatcgtagaaaggctgatagcgccacaacc
tcatttctctcaccacacttgcattttggggaggtgagtgtgagaaaagtcttccatctt
gttcgcatcaagcaggttctgtgggcaaatgaagggaacagggccggcgaagagagtgta
aacttgtttatcaagtcaattggtcttagggaatattcaagatacttgagtttcaaccat
ccttgcactcatgaaaggcctcttcttgggcaccttaagtttttcccttgggttgtggac
gaaggctattttaaggcatggagacaaggtagaacaggttatccattagttgacgctgga
atgagagaattgtgggctgctggttggctgcatgatcgtatacgtgtggtagttgctagt
ttctttgtgaaggttctacaacttccatggagatggggaatgaagtatttttgggatacc
ctattggatgcagatttagagagcgatgctcttgggtggcaatacataaccggcactctc
ccagacagccgtgagtttgatcgcatagataatccacagtttgagggttacaaatttgac
ccgaatggagaatatgtacgccggtggcttcctgaacttgctaggctaccaactgaatgg
atacaccacccatggaatgcacctgaatctgtactccaagctgccggaattgagctggga
tcaaattaccctctccctattgtagggatagatgcagcaaaggtcaggttggaagaagca
ctttcagaaatgtggcagcaagaagctgcttcaagagctgcaattgagaatggaacagag
gaagggcttggagactcctctgaatcagccccatttgccttccccgaagacatacatatg
gaggaaaaccatgagcctgtgagaaacaatcctcctgctacaaatcgtcgctatgaggat
cagatggtcccaagcatgacatcttcctttctgagaattgaagacgaagaaacttctgat
gtacgcaattctacaggagatggcagagcagaggtgccaagagatgtaaatgtgaatcaa
gaaccaagaagagacgctttgaaccaggggtttgttcaaactgttcgtaataacactgct
ttgtcaccatttaatatttcgagaggtctgacaaatgttgaagactcgaccgcagagtct
tcaagtagtggtaggagagagagggatggaggtatagttccagtttggtcccctccaact
tctagttactcagagcagtttgttggtgatgacaatggaattggagcaacttcttcttac
ttgcagaggcatccacagtctcaccagataatcaattggaggcggctatctcaaactggg
taa
DBGET
integrated database retrieval system
